View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11419_low_8 (Length: 385)

Name: NF11419_low_8
Description: NF11419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11419_low_8
NF11419_low_8
[»] chr7 (5 HSPs)
chr7 (20-373)||(20707438-20707792)
chr7 (20-373)||(20875482-20875836)
chr7 (155-325)||(41595380-41595550)
chr7 (38-139)||(41594633-41594734)
chr7 (214-325)||(31420677-31420788)
[»] chr5 (6 HSPs)
chr5 (155-325)||(23122289-23122459)
chr5 (155-325)||(14008231-14008401)
chr5 (41-139)||(14007487-14007585)
chr5 (38-139)||(23123110-23123211)
chr5 (214-325)||(22271618-22271729)
chr5 (63-131)||(7348331-7348399)
[»] chr2 (4 HSPs)
chr2 (155-325)||(43523986-43524156)
chr2 (38-139)||(43523240-43523341)
chr2 (214-325)||(5087406-5087517)
chr2 (46-131)||(5086610-5086695)
[»] chr3 (5 HSPs)
chr3 (155-321)||(22510896-22511062)
chr3 (38-137)||(22511700-22511799)
chr3 (214-325)||(2735308-2735419)
chr3 (214-325)||(40924354-40924465)
chr3 (181-325)||(22127789-22127933)
[»] chr4 (2 HSPs)
chr4 (155-325)||(50413725-50413895)
chr4 (214-306)||(14798457-14798549)
[»] chr6 (1 HSPs)
chr6 (214-325)||(95980-96091)
[»] scaffold0005 (1 HSPs)
scaffold0005 (214-306)||(41179-41271)
[»] chr1 (1 HSPs)
chr1 (214-293)||(27132127-27132206)


Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 20 - 373
Target Start/End: Original strand, 20707438 - 20707792
Alignment:
Q  20 gttcatattaattatatatagaagaatatcctttgtctggtggagagaaacatccaagacggtttcaagacacttggtttagcaaatttctttcatggct 119  Q
    ||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20707438 gttcatattaaatatgtatagaagaatatcttttgtctggtggagagaaacatccaagacggtttcaagacacttggtttagcatatttctttcatggct 20707537  T
Q  120 agaatattcaccttcaaagggtgctgcannnnnnnatatcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatgatgtcctttct 219  Q
    |||||||| |||||||| || |||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  20707538 agaatatttaccttcaacggatgctgcattttttaatatcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatgatgtactttct 20707637  T
Q  220 cgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgtttatgaagg 319  Q
     ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  20707638 tgacataacattgaagtgtctaaccttcacgatcaagggtatgatggtgcaagcaatatgaaagaagaatggaacaatttacaagcgttgtttatgaagg 20707737  T
Q  320 attgtctctaagcatac-acactcannnnnnngctcatatattacaacttgcctt 373  Q
    ||||||||||||||||| |||||||       |||||||||||||||||||||||    
T  20707738 attgtctctaagcatactacactcatttttttgctcatatattacaacttgcctt 20707792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 20 - 373
Target Start/End: Original strand, 20875482 - 20875836
Alignment:
Q  20 gttcatattaattatatatagaagaatatcctttgtctggtggagagaaacatccaagacggtttcaagacacttggtttagcaaatttctttcatggct 119  Q
    ||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20875482 gttcatattaaatatgtatagaagaatatcttttgtctggtggagagaaacatccaagacggtttcaagacacttggtttagcatatttctttcatggct 20875581  T
Q  120 agaatattcaccttcaaagggtgctgcannnnnnnatatcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatgatgtcctttct 219  Q
    |||||||| |||||||| || |||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  20875582 agaatatttaccttcaacggatgctgcattttttaatatcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatgatgtactttct 20875681  T
Q  220 cgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgtttatgaagg 319  Q
     ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  20875682 tgacataacattgaagtgtctaaccttcacgatcaagggtatgatggtgcaagcaatatgaaagaagaatggaacaatttacaagcgttgtttatgaagg 20875781  T
Q  320 attgtctctaagcatac-acactcannnnnnngctcatatattacaacttgcctt 373  Q
    ||||||||||||||||| |||||||       |||||||||||||||||||||||    
T  20875782 attgtctctaagcatactacactcatttttttgctcatatattacaacttgcctt 20875836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 155 - 325
Target Start/End: Original strand, 41595380 - 41595550
Alignment:
Q  155 atatcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatgatgtcctttctcgacataacattgacgtgtctaaccttcacggtca 254  Q
    |||| |||| |||||| | |||||||||||||||||||| |||| |||||| |||| | ||||||||||||||| |||| || ||||||||||  |||||    
T  41595380 atatgagatgtgttaccagcactacatctttaagtcttaaggaagcagtgtgtgatatactttctcgacataaccttgatgtttctaaccttcgtggtca 41595479  T
Q  255 agggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgtttatgaaggattgtc 325  Q
    |||||||||||||||||||||||||| |  ||||||||||  |||||||||||||||||||||||||||||    
T  41595480 agggtatgatggtgcaagcaatatgagaggagaatggaacggtttacaagcattgtttatgaaggattgtc 41595550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 41594633 - 41594734
Alignment:
Q  38 tagaagaatatcctttgtctggtggagagaaacatccaagacggtttcaagacacttggtttagcaaatttctttcatggctagaatattcaccttcaaa 137  Q
    |||||||||||||||||||||||  ||   | ||||||||||||||| |||||||||||||||||  ||||| |||||||||||||||||||||||||||    
T  41594633 tagaagaatatcctttgtctggtacaggagatcatccaagacggtttaaagacacttggtttagcttatttcattcatggctagaatattcaccttcaaa 41594732  T
Q  138 gg 139  Q
    ||    
T  41594733 gg 41594734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 325
Target Start/End: Original strand, 31420677 - 31420788
Alignment:
Q  214 ctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgttta 313  Q
    ||||||||||||||| |||| || |||||| |||  |||||||||||||| ||||| |||||||||| |  |||||||||   |||||||||| | ||||    
T  31420677 ctttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagcacttttta 31420776  T
Q  314 tgaaggattgtc 325  Q
    |||| |||||||    
T  31420777 tgaaagattgtc 31420788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 155 - 325
Target Start/End: Complemental strand, 23122459 - 23122289
Alignment:
Q  155 atatcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatgatgtcctttctcgacataacattgacgtgtctaaccttcacggtca 254  Q
    |||| |||| |||||| | |||||||||||||||||||| |||| |||||| |||| | ||||||||||||||| |||| || ||||||||||  |||||    
T  23122459 atatgagatgtgttactagcactacatctttaagtcttaaggaagcagtgtgtgatatactttctcgacataaccttgatgtttctaaccttcgtggtca 23122360  T
Q  255 agggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgtttatgaaggattgtc 325  Q
    |||||||||||||||||||||||||| |  ||||||||||  |||||||||||||||||||||||||||||    
T  23122359 agggtatgatggtgcaagcaatatgagaggagaatggaacggtttacaagcattgtttatgaaggattgtc 23122289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 155 - 325
Target Start/End: Original strand, 14008231 - 14008401
Alignment:
Q  155 atatcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatgatgtcctttctcgacataacattgacgtgtctaaccttcacggtca 254  Q
    |||| |||| |||||| | |||||||||||||||||||| |||| | |||| |||| | ||||||||||||||| |||| || ||||||||||  |||||    
T  14008231 atatgagatgtgttaccagcactacatctttaagtcttaaggaagcggtgtgtgatatactttctcgacataaccttgatgtttctaaccttcgtggtca 14008330  T
Q  255 agggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgtttatgaaggattgtc 325  Q
    | |||||||||||||||||||||||| |  ||||||||||  |||||||||||||||||||||||||||||    
T  14008331 atggtatgatggtgcaagcaatatgagaggagaatggaacggtttacaagcattgtttatgaaggattgtc 14008401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 41 - 139
Target Start/End: Original strand, 14007487 - 14007585
Alignment:
Q  41 aagaatatcctttgtctggtggagagaaacatccaagacggtttcaagacacttggtttagcaaatttctttcatggctagaatattcaccttcaaagg 139  Q
    ||||||||||||||||||||  ||   | ||||||||||||||| |||||||||||||||||  ||||| |||||||||||||||||||||||||||||    
T  14007487 aagaatatcctttgtctggtacaggagatcatccaagacggtttaaagacacttggtttagcttatttcattcatggctagaatattcaccttcaaagg 14007585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 23123211 - 23123110
Alignment:
Q  38 tagaagaatatcctttgtctggtggagagaaacatccaagacggtttcaagacacttggtttagcaaatttctttcatggctagaatattcaccttcaaa 137  Q
    ||||||||||||||| |||||||  || | | ||||||||||||||| |||||||||||||||||   |||  |||||||||||||||||||||||||||    
T  23123211 tagaagaatatccttcgtctggtaaaggggatcatccaagacggtttaaagacacttggtttagcttgttttattcatggctagaatattcaccttcaaa 23123112  T
Q  138 gg 139  Q
    ||    
T  23123111 gg 23123110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 325
Target Start/End: Complemental strand, 22271729 - 22271618
Alignment:
Q  214 ctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgttta 313  Q
    ||||||||||||||| |||| || |||||| |||  |||||||||||||| ||||| |||||||||| |  |||||||||   |||||||||| | ||||    
T  22271729 ctttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagcacttttta 22271630  T
Q  314 tgaaggattgtc 325  Q
    |||| |||||||    
T  22271629 tgaaagattgtc 22271618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 7348331 - 7348399
Alignment:
Q  63 agagaaacatccaagacggtttcaagacacttggtttagcaaatttctttcatggctagaatattcacc 131  Q
    |||||| ||||||||  |||||||| ||||||||||| |||  |||| ||  |||||||||||||||||    
T  7348331 agagaatcatccaaggtggtttcaacacacttggtttggcatgtttcctttgtggctagaatattcacc 7348399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 5e-44; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 155 - 325
Target Start/End: Original strand, 43523986 - 43524156
Alignment:
Q  155 atatcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatgatgtcctttctcgacataacattgacgtgtctaaccttcacggtca 254  Q
    |||| |||| |||||| | |||||||||||||||||||| |||| | |||| |||| | ||||||||||||||| |||| || ||||||||||  |||||    
T  43523986 atatgagatgtgttaccagcactacatctttaagtcttaaggaagcggtgtgtgatatactttctcgacataaccttgatgtttctaaccttcgtggtca 43524085  T
Q  255 agggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgtttatgaaggattgtc 325  Q
    |||||||||||||||||||||||||| |  ||||||||||  |||||||||||||||||||||||||||||    
T  43524086 agggtatgatggtgcaagcaatatgagaggagaatggaacggtttacaagcattgtttatgaaggattgtc 43524156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 43523240 - 43523341
Alignment:
Q  38 tagaagaatatcctttgtctggtggagagaaacatccaagacggtttcaagacacttggtttagcaaatttctttcatggctagaatattcaccttcaaa 137  Q
    |||||||||||||||||||||||  ||   | ||||||||||||||| |||| |||||||||| |  ||||| |||||||||||||||||||||||||||    
T  43523240 tagaagaatatcctttgtctggtacaggagatcatccaagacggtttaaagatacttggtttaacttatttcattcatggctagaatattcaccttcaaa 43523339  T
Q  138 gg 139  Q
    ||    
T  43523340 gg 43523341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 214 - 325
Target Start/End: Original strand, 5087406 - 5087517
Alignment:
Q  214 ctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgttta 313  Q
    ||||||||||||||| |||| || |||||| |||  |||||||||||||||||||| |||||||||| |  |||||||||   |||||||||| | ||||    
T  5087406 ctttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgatggtgctagcaatatgagaggagaatggaattgtttacaagcacttttta 5087505  T
Q  314 tgaaggattgtc 325  Q
    |||| |||||||    
T  5087506 tgaaagattgtc 5087517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 46 - 131
Target Start/End: Original strand, 5086610 - 5086695
Alignment:
Q  46 tatcctttgtctggtggagagaaacatccaagacggtttcaagacacttggtttagcaaatttctttcatggctagaatattcacc 131  Q
    ||||| ||||||||||   ||||||||||||| |||||||||||||||||||| |||   |||| |||||||||||||||||||||    
T  5086610 tatcccttgtctggtgagcagaaacatccaaggcggtttcaagacacttggttcagcttgtttccttcatggctagaatattcacc 5086695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 155 - 321
Target Start/End: Complemental strand, 22511062 - 22510896
Alignment:
Q  155 atatcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatgatgtcctttctcgacataacattgacgtgtctaaccttcacggtca 254  Q
    |||| |||| |||||| | |||||||||||||||||||| |||| | |||| |||| | ||||||||||||||| |||| || ||||||||||| |||||    
T  22511062 atatgagatgtgttactagcactacatctttaagtcttaaggaagcggtgtgtgatatactttctcgacataaccttgatgtttctaaccttcatggtca 22510963  T
Q  255 agggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgtttatgaaggat 321  Q
    ||||||| |||||||||||||||||| |  ||||||||||  |||||||||||||||||||||||||    
T  22510962 agggtataatggtgcaagcaatatgagaggagaatggaacggtttacaagcattgtttatgaaggat 22510896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 22511799 - 22511700
Alignment:
Q  38 tagaagaatatcctttgtctggtggagagaaacatccaagacggtttcaagacacttggtttagcaaatttctttcatggctagaatattcaccttcaaa 137  Q
    |||||||||||| ||||||||||  || | | ||||||||||||||| |||||||||||||||||  ||||| |||||||||||||||||||||||||||    
T  22511799 tagaagaatatcatttgtctggtaaaggggatcatccaagacggtttaaagacacttggtttagcttatttcattcatggctagaatattcaccttcaaa 22511700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 325
Target Start/End: Original strand, 2735308 - 2735419
Alignment:
Q  214 ctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgttta 313  Q
    ||||||||||||||| |||| || |||||| |||  |||||||||||||| ||||| |||||||||| |  |||||||||   |||||||||| | ||||    
T  2735308 ctttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagcacttttta 2735407  T
Q  314 tgaaggattgtc 325  Q
    |||| |||||||    
T  2735408 tgaaagattgtc 2735419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 325
Target Start/End: Original strand, 40924354 - 40924465
Alignment:
Q  214 ctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgttta 313  Q
    ||||||||||||||| |||| || |||||| |||  |||||||||||||| ||||| |||||||||| |  |||||||||   |||||||||| | ||||    
T  40924354 ctttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagcacttttta 40924453  T
Q  314 tgaaggattgtc 325  Q
    |||| |||||||    
T  40924454 tgaaagattgtc 40924465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 181 - 325
Target Start/End: Complemental strand, 22127933 - 22127789
Alignment:
Q  181 tctttaagtcttacggaaccagtgtatgatgtcctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatga 280  Q
    ||||||| ||||| |||| |||| | || | | |||| |||||||||| ||||||| |||||| ||   |||||||||||||| ||||| ||||||||||    
T  22127933 tctttaactcttaaggaagcagtatgtggtatactttttcgacataactttgacgtttctaacatttgtggtcaagggtatgacggtgctagcaatatga 22127834  T
Q  281 aataagaatggaacaatttacaagcattgtttatgaaggattgtc 325  Q
     |  |||||||||   |||||||||| | |||||||| |||||||    
T  22127833 gaggagaatggaatggtttacaagcactatttatgaaagattgtc 22127789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 155 - 325
Target Start/End: Original strand, 50413725 - 50413895
Alignment:
Q  155 atatcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatgatgtcctttctcgacataacattgacgtgtctaaccttcacggtca 254  Q
    |||| |||||||||||||||||||||||||||| ||||| |||| |||||| |||| | |||||||||| |||| |||| ||||||||||||| ||||||    
T  50413725 atatgagatatgttacaaacactacatctttaactcttaaggaagcagtgtgtgatatgctttctcgacgtaaccttgatgtgtctaaccttcgcggtca 50413824  T
Q  255 agggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgtttatgaaggattgtc 325  Q
    ||||| ||||| | ||||||||| || |  |||||||||   || | ||||||||||||| ||||||||||    
T  50413825 agggtgtgatgatacaagcaatacgagaggagaatggaatggttaataagcattgtttattaaggattgtc 50413895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 214 - 306
Target Start/End: Complemental strand, 14798549 - 14798457
Alignment:
Q  214 ctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagca 306  Q
    ||||||||||||||| |||| || |||||| |||  |||||||||||||| ||||| |||||||||| |  |||||||||   ||||||||||    
T  14798549 ctttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagca 14798457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 325
Target Start/End: Original strand, 95980 - 96091
Alignment:
Q  214 ctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgttta 313  Q
    ||||||||||||||| |||| || |||||| |||  |||||||||||||| ||||| |||||||||| |  |||||||||   |||||||||| | ||||    
T  95980 ctttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagcacttttta 96079  T
Q  314 tgaaggattgtc 325  Q
    |||| |||||||    
T  96080 tgaaagattgtc 96091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 214 - 306
Target Start/End: Original strand, 41179 - 41271
Alignment:
Q  214 ctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagca 306  Q
    ||||||||||||||| |||| || |||||| |||  |||||||||||||| ||||| |||||||||| |  |||||||||   ||||||||||    
T  41179 ctttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagca 41271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 293
Target Start/End: Original strand, 27132127 - 27132206
Alignment:
Q  214 ctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaa 293  Q
    ||||||||||||||| |||| || |||||| |||  |||||||||||||| |||||  ||||||||| |  |||||||||    
T  27132127 ctttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctggcaatatgagaggagaatggaa 27132206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University