View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1141_high_13 (Length: 475)
Name: NF1141_high_13
Description: NF1141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1141_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 30 - 249
Target Start/End: Original strand, 19354088 - 19354307
Alignment:
| Q |
30 |
atgtgttgagatgttgcttagaaaacctttgattagttttatagccacaagttattttcttgaaagtattttatacttatgaagtaggagaagaaaatgt |
129 |
Q |
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| T |
19354088 |
atgtgttgagatgttgcttagaaaacctttgattagttttatagccacaagttattttcttcaaagtattttatacttatgaagtaggagaagaaaatgt |
19354187 |
T |
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| Q |
130 |
ggttcaagtcattacaaatactgctcttgtaattgaagtacttattcattcattggtcgaaaagaaacaagttaaatcctcaaagatcaaaagacttggc |
229 |
Q |
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| T |
19354188 |
ggtccaagtcataacaaatactgctcttgtaattgaagtacttattcattcattggtcgaaaagaaacaagttaaatcctcaaagatcaaaagacttggc |
19354287 |
T |
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| Q |
230 |
ttatatagctacactcaaat |
249 |
Q |
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| T |
19354288 |
ttatatagctacacacaaat |
19354307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 248 - 467
Target Start/End: Original strand, 19354583 - 19354801
Alignment:
| Q |
248 |
atatcatt-tctcttgagacaaacctcgaagttgttatatggtcattactttttatattctacgtgtttctcaagcgttctattaattattattttttca |
346 |
Q |
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|||||||| ||| |||||| |||||||||||||||||||||| ||||||||| | ||||||||||||||||| | |||| ||||||||||||||||||| |
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| T |
19354583 |
atatcattatctattgagataaacctcgaagttgttatatggctattacttttcacattctacgtgtttctcacgtgttcgattaattattattttttca |
19354682 |
T |
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| Q |
347 |
aaacactctttgtctggattatataatcagaactcctacaaaagaattttcgaattatataatctgaaccatgtggaaaatccagaaaatggctttgtac |
446 |
Q |
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| T |
19354683 |
aa-cactctttgtccggattatataatcagaactcctacaaaagaatttttgaattatataatctgaaccatg-cgaaaacccagaaaatggctttgtac |
19354780 |
T |
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| Q |
447 |
ttgataacaaaagtctctgct |
467 |
Q |
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| T |
19354781 |
ttgataacaaaagtctctgct |
19354801 |
T |
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