View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1141_high_16 (Length: 382)
Name: NF1141_high_16
Description: NF1141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1141_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 263153 - 262895
Alignment:
| Q |
14 |
ccaacaatatggctaactagacttaacctaaagttgttttctacggtgtctgtattatatacacatgagtatgatccaacatatatataacataaagaga |
113 |
Q |
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| T |
263153 |
ccaaaaatatggctaactagacttaacctaaagttgttttctacggtgtctgtattatatacacatgagtatgatccaacatata----acataaaaaga |
263058 |
T |
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| Q |
114 |
agtctaactctagagagtattaaacaacttacaacaacaatatcaggaaccttggtcttttctaggtgacttcgatacccattctatgagctcatgaaca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
263057 |
agtctaactctagagagtattaaacaacttacaacagcaatatcaggaaccttggtcttttctaggtgacttcgata-ccattctatgagctcatgaaca |
262959 |
T |
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| Q |
214 |
tagttggcctaactctaataatttagtgtgccttcaaacaatatgtgaaacctacactttgtca |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
262958 |
tagttggcctaactctaataatttagtgtgccttcaaacaatatgtgaaacctacactttgtca |
262895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 14 - 277
Target Start/End: Original strand, 652768 - 653026
Alignment:
| Q |
14 |
ccaacaatatggctaactagacttaacctaaagttgttttctacggtgtctgtattatatacacatgagtatgatccaacatatatataacataaagaga |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
652768 |
ccaaaaatatggctaactagacttaacctaaagttgttttctacggtgtctgtattatatacacatgagtatgatccaacatat----aacataaaaaga |
652863 |
T |
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| Q |
114 |
agtctaactctagagagtattaaacaacttacaacaacaatatcaggaaccttggtcttttctaggtgacttcgatacccattctatgagctcatgaaca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
652864 |
agtctaactctagagagtattaaacaacttacaacagcaatatcaggaaccttggtcttttctaggtgacttcgata-ccattctatgagctcatgaaca |
652962 |
T |
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| Q |
214 |
tagttggcctaactctaataatttagtgtgccttcaaacaatatgtgaaacctacactttgtca |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
652963 |
tagttggcctaactctaataatttagtgtgccttcaaacaatatgtgaaacctacactttgtca |
653026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 14 - 277
Target Start/End: Original strand, 838503 - 838761
Alignment:
| Q |
14 |
ccaacaatatggctaactagacttaacctaaagttgttttctacggtgtctgtattatatacacatgagtatgatccaacatatatataacataaagaga |
113 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
838503 |
ccaaaaatatggctaactagacttaacctaaagttgttttctacggtgtctgtattatatacacatgagtatgatccaacatat----aacataaaaaga |
838598 |
T |
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| Q |
114 |
agtctaactctagagagtattaaacaacttacaacaacaatatcaggaaccttggtcttttctaggtgacttcgatacccattctatgagctcatgaaca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
838599 |
agtctaactctagagagtattaaacaacttacaacagcaatatcaggaaccttggtcttttctaggtgacttcgata-ccattctatgagctcatgaaca |
838697 |
T |
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| Q |
214 |
tagttggcctaactctaataatttagtgtgccttcaaacaatatgtgaaacctacactttgtca |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
838698 |
tagttggcctaactctaataatttagtgtgccttcaaacaatatgtgaaacctacactttgtca |
838761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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