View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1141_high_19 (Length: 361)

Name: NF1141_high_19
Description: NF1141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1141_high_19
NF1141_high_19
[»] chr7 (1 HSPs)
chr7 (30-361)||(7108414-7108757)


Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 30 - 361
Target Start/End: Original strand, 7108414 - 7108757
Alignment:
Q  30 ggattagatatctaatacctaaccctccctcctctaatggcttacaaattttttccatgccacaatgactaatttcctcttctcaatgtccccactccaa 129  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7108414 ggattagatatctaatacctaaccctccttcctctaatggcttacaaatttttttcatgccacaatgactaatttcctcttctcaatgtccccactccaa 7108513  T
Q  130 atgaagttcctaatgcttctctccaaatcttttaacaatgaaaatggcaaaccatataagaacaaattgtgtatcagtattccttgaatcaatgagatta 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  7108514 atgaagttcctaatgcttctctccaaatcttttaacaatgaaaatagcaaagcatataaggacaaattgtgtatcagtattccttgaatcaatgagatta 7108613  T
Q  230 c----------------tatggttttctggaccccttgataaggtctagcttaccttcatccaccaatctagaaatacttctgctcatcacctctttagc 313  Q
    |                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  7108614 ctatggttttctggacatatggttttctggaccccttgataaggtctagcttaccttcatccaccaatctagaaatacctctgctcatcacctctttggc 7108713  T
Q  314 aaaacataaaaggagaggagagatagatacagtattcctgcctcaccc 361  Q
    ||||||||||||||||||||    ||||||||||||||||||||||||    
T  7108714 aaaacataaaaggagaggag----agatacagtattcctgcctcaccc 7108757  T

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