View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1141_high_2 (Length: 944)
Name: NF1141_high_2
Description: NF1141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1141_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 635; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 95 - 879
Target Start/End: Original strand, 928404 - 929174
Alignment:
| Q |
95 |
cattaatgcatattgctttgcaacaaagaaacttgctttctatactttctatgaagttgatgccatcttctctgctggtgtaaggttcccaagagcagaa |
194 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
928404 |
cattaatgcatattgctttgcaacaaagaaacttgctttctatactttctatgaagttgatgccatcttctctgctggtgtaaggttcccaagagcagaa |
928503 |
T |
|
| Q |
195 |
cttggccaccttttcatcagtatgccacaccattacatcatcaaggtcagaaagattaaaggatcggagtgtgatttggttcaaatcaatgatttcttct |
294 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
928504 |
cttggccaccttttcatcagtatgccacaccattacatcatcaaggtcagaaagattaaaggatcggagtgtgatttggttcaaatcaatgatttcttct |
928603 |
T |
|
| Q |
295 |
ttggcacatggttttgaagaaataaaagtttcctccatcacagaattacttgtgtttcttttatgagttattttgaggctatttatatataaagtcatgg |
394 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
928604 |
ttgccacatggttttgaagaaataaaagtttcctccatcacagaattacttttgtttcttttatgagttattttgaggctatttata----aagtcatgg |
928699 |
T |
|
| Q |
395 |
agttgnnnnnnnnnnnnctagaatgaaaggaagttacatggaacatggaacatgggatcaagcaagaaaagggtattaaggggattccaagattgctttc |
494 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
928700 |
agttgaaaaaagaaaaactagaatgaaaggaagttacatggaacatggaacatgggatcaagcaagaaaagggtattaaggggattccaagattgctttc |
928799 |
T |
|
| Q |
495 |
tgtcggtgtgtgtctaccatgtttgacttgacttgactatgtgtttattgggatccaaatcaatgttnnnnnnntagggtcaaatagtgaaacattatca |
594 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||| |
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| T |
928800 |
tgtcggtgtgtgtctaccatgtttgacttgacttgactatgtgtttaatgggatccaaatcaatgttaaaaaaatagggttaaatagtgaaacat----- |
928894 |
T |
|
| Q |
595 |
tatcatatgattttgattccaatacaatataattgatttggtcagttaaataaatgaattgaattagtttaaccaagtaacatcccaaatgaacaatgca |
694 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
928895 |
tatcatatgattttgattccaatacaatataattgatttggtcagttaaataaatgaattgaattagtttaaccaagtaacatcccaaatgaacaatgca |
928994 |
T |
|
| Q |
695 |
cttaaaattacattcaaatatataccc--gtctctaaatttttgagtcaatccttaattagttgatgaactggaatggaacatccacaaattcaacaaca |
792 |
Q |
| |
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|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
928995 |
cttaaa---acattcaaatatatacccctgtctctaaatttttgagtcaatccttaattagttgatgaactggaatggaacatccacaaattcaacaaca |
929091 |
T |
|
| Q |
793 |
atagaaatgaaattacaaattgagtacaacttcttcttaaattctaccataacctcctgactagcaagcaacggagaaacacatcat |
879 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
929092 |
atagaaatgaaattacaaattgagtacaacttcttcttaaattctaccataacctcctgact----agcaacggagaaacacatcat |
929174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 97 - 369
Target Start/End: Original strand, 939331 - 939605
Alignment:
| Q |
97 |
ttaatgcatattgctttgcaacaaagaaacttgctttctatactttctatgaagttgatgccatcttctctgctggtgtaaggttcccaagagcagaact |
196 |
Q |
| |
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|||| ||||||||||||||| || ||||||||| || |||| |||| |||||| ||||||| | |||| |||||||||| ||||||||||||||||||| |
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| T |
939331 |
ttaaggcatattgctttgcaccatagaaacttgtttggtatattttcaatgaagctgatgccttgttctttgctggtgtatggttcccaagagcagaact |
939430 |
T |
|
| Q |
197 |
tggccaccttttcatcagtatgccacaccattacatcatcaaggtcagaaagattaaaggatcggagtgtgatttggttcaaatcaatgatttcttcttt |
296 |
Q |
| |
|
||||||| ||||||||||| ||| ||||| | |||||||||||||||||||| ||| | |||||||||||||||||||||||||||| ||| ||| || |
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| T |
939431 |
tggccactttttcatcagttctccataccatgagatcatcaaggtcagaaagatgaaaaggtcggagtgtgatttggttcaaatcaatgctttgttcatt |
939530 |
T |
|
| Q |
297 |
ggcacatggttttgaagaaataaaagtttcctccatcacaga--attacttgtgtttcttttatgagttattttg |
369 |
Q |
| |
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| ||| |||||| ||||||||||||||||||||||| ||||| | ||||||||||||||| ||||||| |||| |
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| T |
939531 |
gccacttggtttggaagaaataaaagtttcctccataacagaacaacacttgtgtttcttttctgagttaatttg |
939605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 130 - 332
Target Start/End: Original strand, 926122 - 926324
Alignment:
| Q |
130 |
ctttctatactttctatgaagttgatgccatcttctctgctggtgtaaggttcccaagagcagaacttggccaccttttcatcagtatgccacaccatta |
229 |
Q |
| |
|
||||||||| |||| |||||||||||||| | ||| |||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||| |
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| T |
926122 |
ctttctatattttcaatgaagttgatgccttggtctttgctggtgtaaggttccccc---cagaacttggccactttttcatcagtctgccacaccatta |
926218 |
T |
|
| Q |
230 |
catcatcaaggtcagaaagattaaaggatcggagtgtgatttggttcaaatcaatgat---ttcttctttggcacatggttttgaagaaataaaagtttc |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| || |||||||||||||| |
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|
| T |
926219 |
catcatcaaggtcagaaagattaaaggatcggagtgtgatttggttcaaatcgatgatctcttcttctttggcacatggtttggaggaaataaaagtttc |
926318 |
T |
|
| Q |
327 |
ctccat |
332 |
Q |
| |
|
||||| |
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|
| T |
926319 |
ttccat |
926324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 95 - 333
Target Start/End: Original strand, 924049 - 924287
Alignment:
| Q |
95 |
cattaatgcatattgctttgcaacaaagaaacttgctttctatactttctatgaagttgatgccatcttctctgctggtgtaaggttcccaagagcagaa |
194 |
Q |
| |
|
|||| ||||||||||||||||| || ||||||||| | | ||| |||| ||||||||||||||||| || |||||||||| |||||||||||||||| |
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|
| T |
924049 |
cattgatgcatattgctttgcaccatagaaacttggtagcaatattttcaatgaagttgatgccatcatccttgctggtgtagagttcccaagagcagaa |
924148 |
T |
|
| Q |
195 |
cttggccaccttttcatcagtatgccacaccattacatcatcaaggtcagaaagattaaaggatcggagtgtgatttggttcaaatcaatgatttcttct |
294 |
Q |
| |
|
||||||||| ||||||||||| ||| | ||| | ||||||||||||||||||||||| || |||||||||||||||| | | |||||| | |||||| |
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|
| T |
924149 |
cttggccactttttcatcagttgtccatatcatgagatcatcaaggtcagaaagattaaggggtcggagtgtgatttgggttagatcaattctctcttct |
924248 |
T |
|
| Q |
295 |
ttggcacatggttttgaagaaataaaagtttcctccatc |
333 |
Q |
| |
|
||||||| |||||| ||||||||| ||||| ||||||| |
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|
| T |
924249 |
ttggcacctggtttggaagaaatagaagttatctccatc |
924287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 102 - 298
Target Start/End: Original strand, 935547 - 935740
Alignment:
| Q |
102 |
gcatattgctttgcaacaaagaaacttgctttctatactttctatgaagttgatgccatcttctctgctggtgtaaggttcccaagagcagaacttggcc |
201 |
Q |
| |
|
||||||||||||||||| ||| |||||| | | ||| ||| |||||||||||||| | ||| |||||||||||||||||| |||||||||||| |
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| T |
935547 |
gcatattgctttgcaacgtagatacttgcctgccatatttttgatgaagttgatgccttggtctttgctggtgtaaggttccccc---cagaacttggcc |
935643 |
T |
|
| Q |
202 |
accttttcatcagtatgccacaccattacatcatcaaggtcagaaagattaaaggatcggagtgtgatttggttcaaatcaatgatttcttctttgg |
298 |
Q |
| |
|
|| ||||||||||| ||||||||||| | |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
935644 |
actttttcatcagtgtgccacaccatgagatcatcgaggtcagaaagattaaaagatcggagtgtgatttggttcaaatcaatgatctcttctttgg |
935740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 872 - 944
Target Start/End: Original strand, 929256 - 929328
Alignment:
| Q |
872 |
cacatcatagagagaagccaaacattcgggcacaacagccgaacttagacggtcttctgaaacattaaagaaa |
944 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
929256 |
cacaacatagagagaagccaaacattcgggcacaacagccgaacttagacggtcttctgaaacattaaagaaa |
929328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 872 - 928
Target Start/End: Complemental strand, 1201696 - 1201640
Alignment:
| Q |
872 |
cacatcatagagagaagccaaacattcgggcacaacagccgaacttagacggtcttc |
928 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
1201696 |
cacaacatggagagaagccaaacattcgggcacaacagcagaacttagacgctcttc |
1201640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 249
Target Start/End: Original strand, 46648373 - 46648477
Alignment:
| Q |
145 |
atgaagttgatgccatcttctctgctggtgtaaggttcccaagagcagaacttggccaccttttcatcagtatgccacaccattacatcatcaaggtcag |
244 |
Q |
| |
|
||||||| |||| ||||||| || | || ||||| ||||||| ||| |||||||||| ||||||||| || |||||||| ||||||||||| |||| |
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| T |
46648373 |
atgaagtcaatgcaatcttctttgtttgtataaggctcccaagtgcaatacttggccactttttcatcactagtccacaccaaaacatcatcaagatcag |
46648472 |
T |
|
| Q |
245 |
aaaga |
249 |
Q |
| |
|
||||| |
|
|
| T |
46648473 |
aaaga |
46648477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 283
Target Start/End: Original strand, 46656731 - 46656839
Alignment:
| Q |
175 |
taaggttcccaagagcagaacttggccaccttttcatcagtatgccacaccattacatcatcaaggtcagaaagattaaaggatcggagtgtgatttggt |
274 |
Q |
| |
|
||||||||||||| ||| |||||||||| ||| ||||| || ||||| ||| ||||||||||| ||||||||| ||| || ||| || | ||||||| |
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|
| T |
46656731 |
taaggttcccaagtgcaatacttggccacttttgcatcactagtccacaacataacatcatcaagatcagaaagactaatgggtcgaagagagatttggc |
46656830 |
T |
|
| Q |
275 |
tcaaatcaa |
283 |
Q |
| |
|
|||| |||| |
|
|
| T |
46656831 |
tcaagtcaa |
46656839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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