View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1141_high_21 (Length: 351)
Name: NF1141_high_21
Description: NF1141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1141_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 47068126 - 47068473
Alignment:
| Q |
1 |
cagcatcgaaaaccggaaggggaatgatacacttttttatccacagccacctctaattacaagtaccaaagcagtggtgcatattataattgttacatca |
100 |
Q |
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| T |
47068126 |
cagcatcgaaaactggaaggggaatgatacacttttttatccacagccacctctaattacaagtaccaaagcagtggtgcatattatcattgttacatca |
47068225 |
T |
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| Q |
101 |
atttttactgcgcttttgtgttcagcgattttaatatccatccattacgtttacaagattcgggtattaaggtacaaaaggctaatggacactgggaacc |
200 |
Q |
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| T |
47068226 |
atttttactgcgcttttgtgttcagcgattttaatatccatccattacgtttacaagattcgggtattaaggtacaaaaggctaacggacactgggaacc |
47068325 |
T |
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| Q |
201 |
tagggttgaatgaagaggtggctctgagaaggttttcatataacgagctgaaaagagcaacaaatcattttaaggaagagttgggtaagggtgcttttgg |
300 |
Q |
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| T |
47068326 |
tagggttgaatgaagaggtgactctgagaaggttttcatataacgagctgaaaagagcaacaaatcattttaaggaagagttgggtaagggtgcttttgg |
47068425 |
T |
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| Q |
301 |
atcagtttacaaaggggccttaaacaaaggtaagagattgattgcagt |
348 |
Q |
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| T |
47068426 |
atcagtttacaaaggggccttaaacaaaggtaagagattgattgcagt |
47068473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 134 - 348
Target Start/End: Complemental strand, 47076074 - 47075857
Alignment:
| Q |
134 |
atatccatccattacgtttacaagattcgggtattaaggtacaaaaggctaatggacactgggaacct---agggttgaatgaagaggtggctctgagaa |
230 |
Q |
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| T |
47076074 |
atatccatccattacatgtacaaaattcgggtattaaagtataaaaggctaacagaaactgttaactttggagggcagaatgcagatttggctttgagaa |
47075975 |
T |
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| Q |
231 |
ggttttcatataacgagctgaaaagagcaacaaatcattttaaggaagagttgggtaagggtgcttttggatcagtttacaaaggggccttaaacaaagg |
330 |
Q |
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| T |
47075974 |
ggtttacatacaatgagctgagaagagcaacaaataatttcaaggaagagttgggtaagggtgcttttggaaaagtttacaaaggagccttaaacaaagg |
47075875 |
T |
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| Q |
331 |
taagagattgattgcagt |
348 |
Q |
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| T |
47075874 |
taagagattgattgcagt |
47075857 |
T |
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