View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1141_high_29 (Length: 299)
Name: NF1141_high_29
Description: NF1141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1141_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 7375704 - 7375469
Alignment:
| Q |
1 |
tcaaatgcaaccattatgtctgtgtttggcatcaagattcctcctcttcttattcttcctcctcaacttgtcaaaagtaaaagctctctcaagctgctcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7375704 |
tcaaatgcaaccattatgtctgtgtttggcatcaacattcctcctcttcttattcttcctcctcaacttgtcaaaagtaaaagctctctcaagctgctcc |
7375605 |
T |
|
| Q |
101 |
accctttgtgtgagagatgtaagaagtgttgtttgcttttcattcctctcaaataattgtgacatcatttccatcatcttttcattgtcctccatcatcc |
200 |
Q |
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|| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
7375604 |
actctttgtgtaagagatgtaagaagtgttgtttgcttctcattcctctcaaataattgtgccatcatttccatcatcttctcattgtcctccatcatcc |
7375505 |
T |
|
| Q |
201 |
ttttcaacatttttctattccctccatcttcttcct |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
7375504 |
ttttcaacatttttctattccctccatcttcttcct |
7375469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 7278135 - 7278370
Alignment:
| Q |
1 |
tcaaatgcaaccattatgtctgtgtttggcatcaagattcctcctcttcttattcttcctcctcaacttgtcaaaagtaaaagctctctcaagctgctcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7278135 |
tcaaatgcaaccattatgtctgtgtttggcatcaacattcctcctcttcttattcttcctcctcaacttgtcaaaagtaaatgctctctcaagctgctcc |
7278234 |
T |
|
| Q |
101 |
accctttgtgtgagagatgtaagaagtgttgtttgcttttcattcctctcaaataattgtgacatcatttccatcatcttttcattgtcctccatcatcc |
200 |
Q |
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|| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
7278235 |
actctttgtgtaagagatgtaagaagtgttgtttgcttctcattcctctcaaataattgtgccatcatttccatcatcttctcattgtcctccatcatcc |
7278334 |
T |
|
| Q |
201 |
ttttcaacatttttctattccctccatcttcttcct |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
7278335 |
ttttcaacatttttctattccctccatcttcttcct |
7278370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 298
Target Start/End: Original strand, 7278415 - 7278453
Alignment:
| Q |
260 |
tcttctttcacatccacactttcctcaattccttcctcc |
298 |
Q |
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|||||||||||||| |||||||||| ||||||||||||| |
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| T |
7278415 |
tcttctttcacatctacactttccttaattccttcctcc |
7278453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 298
Target Start/End: Complemental strand, 7375424 - 7375386
Alignment:
| Q |
260 |
tcttctttcacatccacactttcctcaattccttcctcc |
298 |
Q |
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|||||||||||||| |||||||||| ||||||||||||| |
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|
| T |
7375424 |
tcttctttcacatctacactttccttaattccttcctcc |
7375386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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