View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1141_high_31 (Length: 269)
Name: NF1141_high_31
Description: NF1141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1141_high_31 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 29 - 256
Target Start/End: Original strand, 15754366 - 15754593
Alignment:
| Q |
29 |
agttttcagcctagttgatgcttgtagatcaggtgctttagaggcaatggaagagctaaagttattaggagtcagatcagtcatgctgacaggagatagc |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15754366 |
agttttcagcctagttgatgcttgtagatcaggtgctttagaggcaatggaagagctaaagttattaggagtcagatcagtcatgctgacaggagatagc |
15754465 |
T |
|
| Q |
129 |
tctcaggttgctatgtatgttcagagtcaggtatgatcaataatgcatatatttctaaaactaaaatgaagattttgttattaaccttataagttttgac |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15754466 |
tctcaggttgctatgtatgttcagagtcaggtatgatcaataatgcatatatttctaaaactaaaatgaagattttgttattaaccttataagttttgac |
15754565 |
T |
|
| Q |
229 |
cattaatgcttcatttgtttacttattc |
256 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
15754566 |
cattaatgcttcatttgtttacttattc |
15754593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University