View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1141_high_36 (Length: 255)
Name: NF1141_high_36
Description: NF1141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1141_high_36 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 29 - 255
Target Start/End: Complemental strand, 53127624 - 53127398
Alignment:
| Q |
29 |
agattgccggtggagcagcagctcgtccatttgtaactcatcacaatgaacttgacatgaaattattcatgagaattgctccagaactttatctcaagca |
128 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53127624 |
agattgccggtggagcagcagctcgtccatttgcaactcatcacaatgaacttgacatgaaattattcatgagaattgctccagaactttatctcaagca |
53127525 |
T |
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| Q |
129 |
gctggttattggtgggctgggtcgtgtttatgaaatcggtaaacaatatagaaatgagggtatggacttgacccacaatcctgagttcacaacttgtgag |
228 |
Q |
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| T |
53127524 |
gctggttattggtgggctgggtcgtgtttatgaaatcggtaaacaatatagaaatgagggtatggacttgacccacaatcctgagttcacaacttgtgag |
53127425 |
T |
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| Q |
229 |
ttctatatgccttttgcggattactat |
255 |
Q |
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| T |
53127424 |
ttctatatgccttttgcggattactat |
53127398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 30 - 237
Target Start/End: Complemental strand, 53109781 - 53109574
Alignment:
| Q |
30 |
gattgccggtggagcagcagctcgtccatttgtaactcatcacaatgaacttgacatgaaattattcatgagaattgctccagaactttatctcaagcag |
129 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
53109781 |
gattgccggtggagcagcagctcgcccatttgtaactcatcacaatgaacttgacttgaagttattcatgagaattgctccagaactttatctcaagcag |
53109682 |
T |
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| Q |
130 |
ctggttattggtgggctgggtcgtgtttatgaaatcggtaaacaatatagaaatgagggtatggacttgacccacaatcctgagttcacaacttgtgagt |
229 |
Q |
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| T |
53109681 |
ctggttgttggtgggctggaacgtgtttatgaaattggtaaacaatttagaaatgagggtatagacatgacacacaatcctgagttcactgcatgtgagt |
53109582 |
T |
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| Q |
230 |
tctatatg |
237 |
Q |
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| T |
53109581 |
tttatatg |
53109574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 29 - 237
Target Start/End: Complemental strand, 53115204 - 53114996
Alignment:
| Q |
29 |
agattgccggtggagcagcagctcgtccatttgtaactcatcacaatgaacttgacatgaaattattcatgagaattgctccagaactttatctcaagca |
128 |
Q |
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||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
53115204 |
agattgctggtggagcagcagctcgcccatttgtaactcaccacaatgaacttgacttgaagttattcatgagaattgctccagaactttatctcaagca |
53115105 |
T |
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| Q |
129 |
gctggttattggtgggctgggtcgtgtttatgaaatcggtaaacaatatagaaatgagggtatggacttgacccacaatcctgagttcacaacttgtgag |
228 |
Q |
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||||||| |||||||| ||| |||||||||||||| |||||||||| ||||||||||| ||| ||| | || || ||||| |||||||| || |||||| |
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| T |
53115104 |
gctggttgttggtgggatggaacgtgtttatgaaattggtaaacaatttagaaatgaggatatagaccttacacataatccggagttcactacctgtgag |
53115005 |
T |
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| Q |
229 |
ttctatatg |
237 |
Q |
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|| |||||| |
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| T |
53115004 |
ttttatatg |
53114996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 30 - 237
Target Start/End: Original strand, 15839376 - 15839583
Alignment:
| Q |
30 |
gattgccggtggagcagcagctcgtccatttgtaactcatcacaatgaacttgacatgaaattattcatgagaattgctccagaactttatctcaagcag |
129 |
Q |
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|||||| ||||| || || ||||| ||||||||||||||||| ||||| ||| |||||| ||||||||||||||||||||||||||| ||||||||| || |
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| T |
15839376 |
gattgctggtggtgctgctgctcggccatttgtaactcatcataatgaccttaacatgagattattcatgagaattgctccagaactctatctcaagaag |
15839475 |
T |
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| Q |
130 |
ctggttattggtgggctgggtcgtgtttatgaaatcggtaaacaatatagaaatgagggtatggacttgacccacaatcctgagttcacaacttgtgagt |
229 |
Q |
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||||| ||||||| ||| |||||||||||||| |||||||||| ||| |||||||| || || ||||| || |||||||| || || || ||||||| |
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| T |
15839476 |
ttggttgttggtggtctgaaccgtgtttatgaaattggtaaacaatttaggaatgagggcatagatttgactcataatcctgaatttactacctgtgagt |
15839575 |
T |
|
| Q |
230 |
tctatatg |
237 |
Q |
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|||||||| |
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| T |
15839576 |
tctatatg |
15839583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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