View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1141_low_1 (Length: 1123)
Name: NF1141_low_1
Description: NF1141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1141_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 491; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 399 - 1027
Target Start/End: Original strand, 25015082 - 25015711
Alignment:
| Q |
399 |
aatatcacagaaaaatgggctgaaacggttattaggatagagagaaaatgtgcattaaatgactcttaagtcgtgcaacattacacaggttagaaaaacc |
498 |
Q |
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||||||||||||||| ||||||||| ||||||||||| | |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
25015082 |
aatatcacagaaaaaggggctgaaatggttattaggagaaagagaaaatgtgcattaaatgactcttaagctatgcaacattgcacaggttagaaaaacc |
25015181 |
T |
|
| Q |
499 |
cttacatttaatcctattatagattggaggtttccagataacctcaatgattttgggagcctttgggtggcgagtgtcaattccaaagacttttaagatc |
598 |
Q |
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||||||||||| | | || |||||||| ||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
25015182 |
cttacatttaaccgt--taaagattggaagttgccagataacctcaatgattttgggagcctttggatggtgagtgtcaattccaaagacttttaagatc |
25015279 |
T |
|
| Q |
599 |
acacaattttaatgcaaaga---ttaatttaaaaagcacacaaaaacacattctttttaactagttaatgcaaatatttgtctctagatatattatgctc |
695 |
Q |
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||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25015280 |
acaaaattttaatgcaaagaagattaatttaaaaagcacacaaaaacacattctttttaactagttaatgcaaatatttgtctctagatatattatgctc |
25015379 |
T |
|
| Q |
696 |
taagttgtaatggttccttaaagaactcattttaccggggattcagatatgagtgatgataaccatgatgagcaaaattctcgcaaatccattgcgaaag |
795 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
25015380 |
taagttgtaatggttccttaaagaactcattttaccggggattcagatatgagtgatgctaaccatgatgagcaaaattctcgcgaatccattgcgaaag |
25015479 |
T |
|
| Q |
796 |
gctaattgcaatggtaacnnnnnnnnggctctcaccaaccatacatattgcagttataaaaaattaaggagttatcttttaagcatgtcgggatgactgg |
895 |
Q |
| |
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| T |
25015480 |
gctaattgcaatggtaaaaaaaaagaggctcccacaaaccatacatattgcagttataaaaaattaaggagttatcttttaagcatgtcgggatgactgg |
25015579 |
T |
|
| Q |
896 |
tgaagcatcctttcgctataaacaacatttccgttcagatagagatagatacttagtttaaactaaggaaactaattcaaaattaaagtagttcttgatt |
995 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25015580 |
tgaagcatcctttcgctataaacagcatttccgttcagatagagatagatacttagtataaactaaggaaactaattcaaaattaaagtagttcttgatt |
25015679 |
T |
|
| Q |
996 |
aatgaccaagttcatatcatattattggggat |
1027 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
25015680 |
aatgaccaagttcatatcatattattggggat |
25015711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 16 - 375
Target Start/End: Original strand, 25014722 - 25015081
Alignment:
| Q |
16 |
atgaactcgcaaaaggaaagcagggatctcgcaaatctgatcagaaaaggaaagggacacaacacaatcaatcggaacaagaaatagaagaacagatgac |
115 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| |
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| T |
25014722 |
atgaactcgcaaaaggaaagcagggatctcgcaaatccgatcagaaaaggaaagggacacaacacaatcaatcggaacaagaaataaaagaacataggac |
25014821 |
T |
|
| Q |
116 |
acacaaaagtaaacaatcagattgattcaataatcaacggcatcgaggaacaaacactcacaagatcagcacttagtcaaaggacaaacagacgggaacc |
215 |
Q |
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| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25014822 |
atacaaaagtaaacgatcagattgattcaataatcaacggcatcgagggacaaacactcacaagatcaacacttagtcaaaggacaaacagacgggaacc |
25014921 |
T |
|
| Q |
216 |
caggagagaaaaaagattgtccactacaggatttattttgattaaagtattctttttaattgatgaaagaatagtaaaaggattgattcctaatcttctc |
315 |
Q |
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||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25014922 |
caggagagaaaaaagattgtccactgcaggatttatttcgattaaagtattctttttaattgataaaagaatagtaaaaggattgattcctaatcttctc |
25015021 |
T |
|
| Q |
316 |
attttctttcaacagnnnnnnncttggaagaaaataaaatattcttgtgtctctgtcatc |
375 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
25015022 |
attttctttcaacagttattttcttggaagaaaataaaatattcttgtgtctctatcatc |
25015081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 434 - 500
Target Start/End: Complemental strand, 25014516 - 25014449
Alignment:
| Q |
434 |
gatagagagaaaa-tgtgcattaaatgactcttaagtcgtgcaacattacacaggttagaaaaaccct |
500 |
Q |
| |
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||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||| |||| |
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| T |
25014516 |
gatagagagaaaaatgtgcattaaatgactcttaagctgtgcaacattgcacaggttagaaaacccct |
25014449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 126 - 224
Target Start/End: Original strand, 19116131 - 19116229
Alignment:
| Q |
126 |
aaacaatcagattgattcaataatcaacggcatcgaggaacaaacactcacaagatcagcacttagtcaaaggacaaacagacgggaacccaggagaga |
224 |
Q |
| |
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|||| ||||||||||||||| ||||||| |||||||||||||| |||||||||| ||| | ||||||||||||||| ||||||| ||||||||||||| |
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| T |
19116131 |
aaacgatcagattgattcaacaatcaaccgcatcgaggaacaagcactcacaaggtcaacgtttagtcaaaggacaatcagacggaaacccaggagaga |
19116229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 8e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 260 - 496
Target Start/End: Complemental strand, 43230708 - 43230469
Alignment:
| Q |
260 |
aagtattctttttaattgatgaaagaatagtaaaaggattgattcctaatcttctcattttctttcaacagnnnnnnnctt-------ggaagaaaataa |
352 |
Q |
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|||| ||| |||| ||| |||||||||||||||| | ||| ||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
43230708 |
aagttttcattttgatttatgaaagaatagtaaatg-attaattcctaatcttctcattttctttcaacacaattcttatttcttttgggaagaaaataa |
43230610 |
T |
|
| Q |
353 |
aatattcttgtgtctctgtcatccattttcaagagaagaggtaattaatatcacagaaaaatgggctgaaacggttattaggatagagagaaaatgtgca |
452 |
Q |
| |
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||| | ||| ||||| |||||||||||||||||||||||||||||||| ||| ||||||||| ||||| ||||||| || ||||| |||||||| |
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| T |
43230609 |
catactattgcgtctccatcatccattttcaagagaagaggtaattaata-aacataaaaatgggttgaaatagttatta-gagagagaaaaaatgtg-t |
43230513 |
T |
|
| Q |
453 |
ttaaatgactcttaagtcgtgcaacattacacaggttagaaaaa |
496 |
Q |
| |
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||||||||||||||| |||||||||| ||| |||||||||| |
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| T |
43230512 |
ttaaatgactcttaaactgtgcaacattgtacatgttagaaaaa |
43230469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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