View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1141_low_11 (Length: 662)
Name: NF1141_low_11
Description: NF1141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1141_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 101 - 586
Target Start/End: Complemental strand, 8361785 - 8361280
Alignment:
| Q |
101 |
cctcaacaatacttattagtttaacttcatgaatgctttttactatttcatatatttcaaacaaaatctatcattgttattccggaatgctagttttagt |
200 |
Q |
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| T |
8361785 |
cctcaacaatacttattagtttaacttcatgaatgctttttactatttcatatatttcaaacaaaatctatcattattattcgagaatgctagttttagt |
8361686 |
T |
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| Q |
201 |
gagttatatgatatattttgcatcaaatatatccttcnnnnnnnnnaaagcatcaaacatattaatttatcgtgacta--gtatatcggtattaatatan |
298 |
Q |
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| T |
8361685 |
gagttatatgatatattttgcatcaaatatatcctt--ttttttttaaagcatcaaacatattaatttatcgtgactatagtatatcggtattaatatat |
8361588 |
T |
|
| Q |
299 |
nnnnnn-acaactgtaattaaataggattagtcaaaaatacttatccatctaaaatcgtatttaattggattggatttgatttatattttttcaatgatc |
397 |
Q |
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| T |
8361587 |
tttttttacaactgtaattaaattggattagtcaaaaatacttatccatctaaaatcgtatttaattggattggatttgacttatattttttcaatgatc |
8361488 |
T |
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| Q |
398 |
aaatcaaactccgtgtgatttaaactttgatattacatttttaaattaggtttaattcactcttat-----------------aaaaattgttgtctatt |
480 |
Q |
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| T |
8361487 |
aaatcaaactctgtatgatttaaactttgatattacatttttaaattaggtttaattcactcttataaaacgtcttgatagataaaaattgtcgtctatt |
8361388 |
T |
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| Q |
481 |
ctctatgtgacttttttccttgaataatgtga--nnnnnnnngtctcaaaaccgataaaaattgcattttgaacaccccaaattgtaatcaaccagacaa |
578 |
Q |
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| T |
8361387 |
ctctatgtgacttttttccttgaataatgtgaatttttttttgtctcaaaaccgataaaaattgcattttgaacaccccaaattgtaatcaaccagacaa |
8361288 |
T |
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| Q |
579 |
ttgaaatg |
586 |
Q |
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| T |
8361287 |
ttgaaatg |
8361280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 30 - 60
Target Start/End: Complemental strand, 8362141 - 8362111
Alignment:
| Q |
30 |
taatgtaacaaacaatattggattaatttat |
60 |
Q |
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| T |
8362141 |
taatgtaacaaacaatattggattaatttat |
8362111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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