View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1141_low_14 (Length: 578)
Name: NF1141_low_14
Description: NF1141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1141_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 30 - 463
Target Start/End: Complemental strand, 9206312 - 9205875
Alignment:
| Q |
30 |
gattgtgtatgagtggtaatcaaaaatgtagtgatgaccttgaatcatgctatcttatttttaattcagtcaaaataatcaattgtccaaaattcttgtc |
129 |
Q |
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|||||||||| ||||| | ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
9206312 |
gattgtgtattagtggcagccaaaaatgtagtgatgaccttgaatcatgctgtcttatttttaattcaatcaaaataatcaattgtccaaaattcttgtc |
9206213 |
T |
|
| Q |
130 |
catattatcattggttgctgcagaattgagttaaaggttgatgcaaatctcggttgtttgcgaggaagaaggctccataccaagaataagaggagaggac |
229 |
Q |
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||||||| ||||||||| |||| ||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
9206212 |
catattaacattggttgttgcataattgggttaaaggttgatgcaaatctcagttgtttgcgaggaaaaaggctccataccaagaataagagaagaggac |
9206113 |
T |
|
| Q |
230 |
agggaaaaaggaatgaaatnnnnnnntattaggtgtttgtcggtttatgttaattatcatagaggttcataatccaacggctgacttttatttattttg- |
328 |
Q |
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|| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9206112 |
agaaaaaaaggaatgaaataaaaaaatattaggtgtttgtcggtttatgttaactatcatagaggttcataatccaacggctgacttttatttattttgc |
9206013 |
T |
|
| Q |
329 |
-tnnnnnnnnnngtttaagtcttctatgatatgagatttaaagaggtc-tccaacgtagc-tttgccttgatacgcgtcatatcaaatgatgnnnnnnnn |
425 |
Q |
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| |||| ||| ||| |||||||||| |||||||||| |||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
9206012 |
aaaaaaaaaaaaggttaaatctcctacgatatgagatctaaagaggtcttccaccgtagcatttgccttgatacgcgtcatatcaaatgatgttttttcc |
9205913 |
T |
|
| Q |
426 |
nnnnnattaaaaggatttcaaatgatgctaataactaa |
463 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
9205912 |
tttttattaaaaggatttcaaatgatgctaataactaa |
9205875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 84 - 328
Target Start/End: Original strand, 9112869 - 9113113
Alignment:
| Q |
84 |
ttatttttaattcagtcaaaataatcaattgtccaaaattcttgtccatattatcattggttgctgcagaattgagttaaaggttgatgcaaatctcggt |
183 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||| ||||||| ||||||| ||||||||||| |||||||||| || |
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| T |
9112869 |
ttatttttaattcagtcaaaataatcaactgtccaaaattcttgtccatattgtgatttgttgctgtagaattgggttaaaggttgctgcaaatctcagt |
9112968 |
T |
|
| Q |
184 |
tgtttgcgaggaagaaggctccataccaagaataagaggagaggacagggaaaaaggaatgaaatnnnnnnntattaggtgtttgtcggtttatgttaat |
283 |
Q |
| |
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|||||| ||||||||||||||| |||||||||| ||||||||||| |||||||||||| |||| |||||||||||||| |||||||| ||| |
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| T |
9112969 |
tgtttgtgaggaagaaggctccgtaccaagaatgagaggagaggagggggaaaaaggaagaaaataaaaatatattaggtgtttgttggtttatgctaac |
9113068 |
T |
|
| Q |
284 |
tatcatagaggttcataatccaacggctgacttttatttattttg |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
9113069 |
tatcatagaggttcataatccaacggctgacttctatttattttg |
9113113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 489 - 573
Target Start/End: Complemental strand, 9205874 - 9205795
Alignment:
| Q |
489 |
ctaataagcgtcgttttctactaggattatgagttatgacaacttttctattatcccaaaattacatgtttatccctttgcttct |
573 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||| |||| |||| |
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| T |
9205874 |
ctaataagcgtcgttttctactaggat-atgagttatgac----tttctattatcccaaaattacatgtttgtccttttggttct |
9205795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 30 - 328
Target Start/End: Complemental strand, 7171568 - 7171262
Alignment:
| Q |
30 |
gattgtgtatgagtggtaatcaaaaatgtagtgatgaccttgaatcatgctatct---------tatttttaattcagtcaaaataatcaattgtccaaa |
120 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
7171568 |
gattgtgtatgagtggtagccaaaaatgtagtgatgaacttgaatcatgctgtctcatttttattatttttaattcagtcaaaataatcaattgtccaaa |
7171469 |
T |
|
| Q |
121 |
attcttgtccatattatcattggttgctgcagaattgagttaaaggttgatgcaaatctcggttgtttgcgaggaagaaggctccataccaagaataaga |
220 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
7171468 |
attcttgtccatattgtcattggttgctgcagaattgggttaaa--ttgatgcaaatctgagttgtttgcgaggaagaaggctccatatcaagaataaga |
7171371 |
T |
|
| Q |
221 |
ggagaggacagggaaaaaggaatgaaat-nnnnnnntattaggtgtttgtcggtttatgttaattatcatagaggttcataatccaacggctgactttta |
319 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
7171370 |
ggagaggacagggaaaaaggaatgaaataaaaaaaatattaggtgtttgttggtttatgttaactatcatagaggttcaaaatccaacggctgactttta |
7171271 |
T |
|
| Q |
320 |
tttattttg |
328 |
Q |
| |
|
||||||||| |
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| T |
7171270 |
tttattttg |
7171262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 140; Significance: 5e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 84 - 328
Target Start/End: Complemental strand, 32242777 - 32242533
Alignment:
| Q |
84 |
ttatttttaattcagtcaaaataatcaattgtccaaaattcttgtccatattatcattggttgctgcagaattgagttaaaggttgatgcaaatctcggt |
183 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||| ||||||| | ||||| ||||||||||| |||||||||| || |
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| T |
32242777 |
ttatttttaattcaatcaaaataatcaactgtccaaaattcttgtccatattatgatttgttgctgtataattgggttaaaggttgctgcaaatctcagt |
32242678 |
T |
|
| Q |
184 |
tgtttgcgaggaagaaggctccataccaagaataagaggagaggacagggaaaaaggaatgaaatnnnnnnntattaggtgtttgtcggtttatgttaat |
283 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||| ||||||||||| |||||||||||| |||| |||||||||||||| |||||||| ||| |
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| T |
32242677 |
tgtttgtgaggaagaaggctccgtaccaagaatgagaggagaggagggggaaaaaggaagaaaataaaaatatattaggtgtttgttggtttatgctaac |
32242578 |
T |
|
| Q |
284 |
tatcatagaggttcataatccaacggctgacttttatttattttg |
328 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
32242577 |
tatcatagaggttcataatccaacggctcacttctatttattttg |
32242533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 2e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 84 - 328
Target Start/End: Original strand, 33477350 - 33477593
Alignment:
| Q |
84 |
ttatttttaattcagtcaaaataatcaattgtccaaaattcttgtccatattatcattggttgctgcagaattgagttaaaggttgatgcaaatctcggt |
183 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||||||| | ||| ||||||| ||||||| ||||||||||| |||||||||| || |
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|
| T |
33477350 |
ttatttttaattcagtcaaaataatcaactgtctaaaattcttgtccatattgtgatttgttgctgtagaattgggttaaaggttgctgcaaatctcagt |
33477449 |
T |
|
| Q |
184 |
tgtttgcgaggaagaaggctccataccaagaataagaggagaggacagggaaaaaggaatgaaatnnnnnnntattaggtgtttgtcggtttatgttaat |
283 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||| ||||||||||| |||||||||||| |||| ||||| ||||||| ||||||| ||| |
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| T |
33477450 |
tgtttgtgaggaagaaggctccgtaccaagaatgagaggagagga-ggggaaaaaggaagaaaattaaaatatattacatgtttgttagtttatgctaac |
33477548 |
T |
|
| Q |
284 |
tatcatagaggttcataatccaacggctgacttttatttattttg |
328 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||| |
|
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| T |
33477549 |
tatcatagaggttcataatctaacggctgacttctatttattttg |
33477593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 84 - 225
Target Start/End: Original strand, 37460322 - 37460468
Alignment:
| Q |
84 |
ttatttttaattcagtcaaaataatcaattgtccaaaattcttgtccatattatca----ttggttgctgcagaattgagtt-aaaggttgatgcaaatc |
178 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||||||||||| | | ||||||||||||||||| ||| |||||||| |||||||| |
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|
| T |
37460322 |
ttatttttaattcaatcaaaataatcaactgtccaaaattcttgtccatattgtaacaatatggttgctgcagaattgggttaaaaggttgctgcaaatc |
37460421 |
T |
|
| Q |
179 |
tcggttgtttgcgaggaagaaggctccataccaagaataagaggaga |
225 |
Q |
| |
|
|| || ||| |||||||||| ||| ||||||||||||||||||| |
|
|
| T |
37460422 |
tcatctgattgtgaggaagaagactctgtaccaagaataagaggaga |
37460468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 116; Significance: 1e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 84 - 329
Target Start/End: Original strand, 40273324 - 40273578
Alignment:
| Q |
84 |
ttatttttaattcagtcaaaataatcaattgtccaaaattcttgtccatattatcattggttgctgcagaattgagttaaaggttgatgcaaatctcggt |
183 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||| ||||||| ||||||| ||||||||||| ||| |||||| || |
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|
| T |
40273324 |
ttatttttaattcagtcaaaataatcaactgtccaaaattcttgtccatattgtgatttgttgctgtagaattgggttaaaggttgctgc-aatctcagt |
40273422 |
T |
|
| Q |
184 |
tgtttgcgaggaagaaggctccataccaagaataagaggagaggaca----------gggaaaaaggaatgaaatnnnnnnntattaggtgtttgtcggt |
273 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||| ||||||||||| | |||||||||||| |||| |||||||||||||| ||| |
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|
| T |
40273423 |
tgtttgtgaggaagaaggctccgtaccaagaatgagaggagaggagaggagaggagggggaaaaaggaagaaaataaaaatatattaggtgtttgttggt |
40273522 |
T |
|
| Q |
274 |
ttatgttaattatcatagaggttcataatccaacggctgacttttatttattttgt |
329 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| || |||| |||||||||||| |
|
|
| T |
40273523 |
ttatgttaactatcatagaggttcataatccaacgactaacttctatttattttgt |
40273578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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