View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1141_low_18 (Length: 493)
Name: NF1141_low_18
Description: NF1141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1141_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 29 - 483
Target Start/End: Complemental strand, 33823732 - 33823278
Alignment:
| Q |
29 |
actattgtgactaaatattgattctggcatttgtgagtaaaatgaggaaaggaaaataagtgaacatatagtgaatggccattgtctctgaagtcacatg |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33823732 |
actattgtgactaaatattgattctggcatttgtgagtaaaatgaggaaaggaaaataagtgaacatatagtgaatggccattgtctctgaagtcacatg |
33823633 |
T |
|
| Q |
129 |
taggttcagtcatgttatttaatgtacaagtagcatgcatgtctttatgttcttctgttctttcaccaattggaaaagggtagatgtaagcaaagtagga |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33823632 |
taggttcagtcatgttatttaatgtacaagtagcatgcatgtctttatgttcttctgttctttcaccaattggaaaagggtagatgtaagcaaagaagga |
33823533 |
T |
|
| Q |
229 |
aacaaaatatgcatacaaattaacaatgctagactaataataattcatacaccaaagattctttcagttgaactattgactcttcacatgtacttttata |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33823532 |
aacaaaatatgcatacaaattaacaatgctagactaataataattcatacaccaaagattctttcagttgaactattgattcttcacatgtacttttata |
33823433 |
T |
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| Q |
329 |
agtgtccttcacatgaaatgctctatttccataattagtgtggacttattaattacaattgagcttaattaggacaattggtcgaatctcactttataga |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33823432 |
agtgtccttcacatgaaatgctctatttccataattagtgtggacttattaattacaattgagcttaattaggacaattggtcgaatctcactttataga |
33823333 |
T |
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| Q |
429 |
ttgatgttagcatatataattaagttagagaccctgtgacactgtcccccctttg |
483 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33823332 |
ttgatgttagcatatataattaagttagagaccctgtgacactgtcccccttttg |
33823278 |
T |
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