View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1141_low_19 (Length: 491)
Name: NF1141_low_19
Description: NF1141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1141_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 8e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 236 - 407
Target Start/End: Original strand, 22187124 - 22187295
Alignment:
| Q |
236 |
tacctcagtcacagtgtgagtgtgtctaataacaacctaagaaattcaggtccatgaaacaggaagaagaagttgaaaaatggggtgttcttgaaaaaag |
335 |
Q |
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| T |
22187124 |
tacctcagtcacagtgtgagtatgtctaataacaacctaagaaattcaggtccatgaaacaggaagaagaagttgaaaaatggggtgttcttgaaaaaag |
22187223 |
T |
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| Q |
336 |
agaggaagtgaaaaccgaggtgcagtgtaatgcaggaactttaccttatcaatatcatggtgtagtagtagt |
407 |
Q |
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| T |
22187224 |
agaggaagtgaaaaccgaggtgcagtgtaatgcaggaactttaccttatcaatatcatggtgtagtagtagt |
22187295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 7 - 134
Target Start/End: Original strand, 22186881 - 22187008
Alignment:
| Q |
7 |
tccaagaatataagttcacatgaactttatataaatgtaacaaaataacaagacaatgatttcagaaacaagacatgttgaacaaaagaagaacataaga |
106 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22186881 |
tccaagaaaataagttcacatgaactttatataaatgtaacaaaataacaagacaatgatttcagaaacaagacatgttgaacaaaagaagaacataaga |
22186980 |
T |
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| Q |
107 |
acaagaaactttgcaccaaaaaatatac |
134 |
Q |
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| T |
22186981 |
acaagaaactttgcaccaaaaaatatac |
22187008 |
T |
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