View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1141_low_21 (Length: 443)

Name: NF1141_low_21
Description: NF1141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1141_low_21
NF1141_low_21
[»] chr7 (14 HSPs)
chr7 (20-348)||(27133983-27134310)
chr7 (20-210)||(27147035-27147221)
chr7 (80-213)||(27157957-27158088)
chr7 (93-212)||(27165508-27165627)
chr7 (93-212)||(27220198-27220317)
chr7 (93-199)||(27304360-27304466)
chr7 (93-211)||(27301500-27301621)
chr7 (107-212)||(27281674-27281779)
chr7 (99-212)||(27296134-27296247)
chr7 (126-212)||(27243104-27243190)
chr7 (107-212)||(27271563-27271668)
chr7 (107-212)||(27249054-27249159)
chr7 (133-212)||(27312620-27312699)
chr7 (130-187)||(27246136-27246193)
[»] chr1 (2 HSPs)
chr1 (130-199)||(14884287-14884356)
chr1 (126-199)||(14889938-14890011)


Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 20 - 348
Target Start/End: Original strand, 27133983 - 27134310
Alignment:
Q  20 aacattgtgaccaaagttgaattagtggtatcttctaactctataaatacttgatcattccattcatctccacacacacttgaatagcatttcctctatc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27133983 aacattgtgaccaaagttgaattagtggtatcttctaactctataaatacttgatcattccattcatctccacacacacttgaatagcatttcctctatc 27134082  T
Q  120 aaaatctccaaatcatggctagctcaatgcttgttaagattacttgcttgtctatgctatgcttggttttggccattccattatcaaatgctggtatgac 219  Q
    ||| |||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27134083 aaa-tctccaaaccatggctagctcaatgcttgttaagattacttgtatgtctatgctatgcttggttttggtcattccattatcaaatgctggtatgac 27134181  T
Q  220 atgcaatgaagtgacagatactttatatccatgtgctgggtatgctacaacacccggtgatgaccctccccctgcaggatgttgcggtgggcttaaggat 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27134182 atgcaatgaagtgacagatactttatatccatgtgctgggtatgctacaacacccggcgatgaccctccccctgcaggatgttgcggtgggcttaaggat 27134281  T
Q  320 ataaaagacaaagccacaactacacctga 348  Q
    |||||||||||||||||||||||||||||    
T  27134282 ataaaagacaaagccacaactacacctga 27134310  T

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Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 27147035 - 27147221
Alignment:
Q  20 aacattgtgaccaaagttgaattagtggtatcttctaactctataaatacttgatcattccattcatctccacacacacttgaatagcatttcctctatc 119  Q
    ||||||| || |||||||||||| ||| |||||||| ||||||||||||||| |  ||| |||||||||| ||||  |||||||| ||||||||||||||    
T  27147035 aacattgggagcaaagttgaattcgtgatatcttctcactctataaatacttaa--attgcattcatctctacac--acttgaattgcatttcctctatc 27147130  T
Q  120 aaaatctccaaatcatggctagctcaatgcttgttaagattacttgcttgtctatgctatgcttggttttggccattccattatcaaatgc 210  Q
    ||||| |||||||||||||||||||||||||| ||||| ||||||| |||||| || | |||||| ||||||||||||||||| |||||||    
T  27147131 aaaatttccaaatcatggctagctcaatgcttattaaggttacttgtttgtctgtgatgtgcttgcttttggccattccattagcaaatgc 27147221  T

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Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 80 - 213
Target Start/End: Original strand, 27157957 - 27158088
Alignment:
Q  80 cattcatctccacacacacttgaatagcatttcctctatcaaaatctccaaatcatggctagctcaatgcttgttaagattacttgcttgtctatgctat 179  Q
    ||||||||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| |||||| || | |    
T  27157957 cattcatctccaca--cacttgaattgcatttcctctatcaaaatttccaaatcatggctagctcaatgcttattaaggttacttgtttgtctgtgatgt 27158054  T
Q  180 gcttggttttggccattccattatcaaatgctgg 213  Q
    ||||||||||||||||||||||| ||||||||||    
T  27158055 gcttggttttggccattccattagcaaatgctgg 27158088  T

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Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 93 - 212
Target Start/End: Original strand, 27165508 - 27165627
Alignment:
Q  93 acacacttgaatagcatttcctctatcaaaatctccaaatcatggctagctcaatgcttgttaagattacttgcttgtctatgctatgcttggttttggc 192  Q
    ||||| |||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||| |||||| || ||||||||||||||||    
T  27165508 acacaattgaattgcatttcctctatcaaaatttccaaatcatggctacctcaatgcttgttaagatcacttgtttgtctgtgatatgcttggttttggc 27165607  T
Q  193 cattccattatcaaatgctg 212  Q
    |||||||||| | |||||||    
T  27165608 cattccattagccaatgctg 27165627  T

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Target: chr7; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 93 - 212
Target Start/End: Original strand, 27220198 - 27220317
Alignment:
Q  93 acacacttgaatagcatttcctctatcaaaatctccaaatcatggctagctcaatgcttgttaagattacttgcttgtctatgctatgcttggttttggc 192  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| | ||| ||||||| ||| ||||| |||||||||||||||     
T  27220198 acacacttgaatagcatttcctctatcaaaatttccaaatcatggctagttcaatgcttttgaaggttacttgtttggctatgatatgcttggttttggg 27220297  T
Q  193 cattccattatcaaatgctg 212  Q
    |||||||||| | |||||||    
T  27220298 cattccattagccaatgctg 27220317  T

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Target: chr7; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 93 - 199
Target Start/End: Original strand, 27304360 - 27304466
Alignment:
Q  93 acacacttgaatagcatttcctctatcaaaatctccaaatcatggctagctcaatgcttgttaagattacttgcttgtctatgctatgcttggttttggc 192  Q
    |||||||||||| |||||||||||  |||||| |||||||||||||||| ||||||||||| ||  ||||||||||| ||||| |||||||||||||||     
T  27304360 acacacttgaattgcatttcctcttccaaaatttccaaatcatggctagttcaatgcttgtcaaagttacttgcttggctatgatatgcttggttttggg 27304459  T
Q  193 cattcca 199  Q
    |||||||    
T  27304460 cattcca 27304466  T

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Target: chr7; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 93 - 211
Target Start/End: Original strand, 27301500 - 27301621
Alignment:
Q  93 acacacttgaatagcatttcctctatcaaaatctccaaatcatggctagctcaatgcttg---ttaagattacttgcttgtctatgctatgcttggtttt 189  Q
    ||||||||||||||||||||||||  |||||| |||||||||||||||| ||||||||||   | ||  ||||||||||| ||||| |||||||||||||    
T  27301500 acacacttgaatagcatttcctcttccaaaatttccaaatcatggctagttcaatgcttgtgatcaaagttacttgcttggctatgatatgcttggtttt 27301599  T
Q  190 ggccattccattatcaaatgct 211  Q
    |  |||||||||| | ||||||    
T  27301600 gtgcattccattagccaatgct 27301621  T

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Target: chr7; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 107 - 212
Target Start/End: Original strand, 27281674 - 27281779
Alignment:
Q  107 catttcctctatcaaaatctccaaatcatggctagctcaatgcttgttaagattacttgcttgtctatgctatgcttggttttggccattccattatcaa 206  Q
    ||||||||||  |||||| |||||||||||||||| ||||||||||| ||| ||||||| ||| ||||| ||||||||||||||| ||||||| || | |    
T  27281674 catttcctcttccaaaatttccaaatcatggctagttcaatgcttgtcaaggttacttgtttggctatgatatgcttggttttgggcattccactagcca 27281773  T
Q  207 atgctg 212  Q
    ||||||    
T  27281774 atgctg 27281779  T

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Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 99 - 212
Target Start/End: Original strand, 27296134 - 27296247
Alignment:
Q  99 ttgaatagcatttcctctatcaaaatctccaaatcatggctagctcaatgcttgttaagattacttgcttgtctatgctatgcttggttttggccattcc 198  Q
    |||||| |||||||||||   ||||| |||||||||||||||| ||||||||||| ||| ||||||| ||| ||| | ||||||||||||||| ||||||    
T  27296134 ttgaattgcatttcctcttcaaaaatttccaaatcatggctagttcaatgcttgtcaaggttacttgtttggctacgatatgcttggttttgggcattcc 27296233  T
Q  199 attatcaaatgctg 212  Q
    | || | |||||||    
T  27296234 actagccaatgctg 27296247  T

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Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 126 - 212
Target Start/End: Original strand, 27243104 - 27243190
Alignment:
Q  126 tccaaatcatggctagctcaatgcttgttaagattacttgcttgtctatgctatgcttggttttggccattccattatcaaatgctg 212  Q
    |||||||||||||||| ||||||||||| ||| ||||||| ||| ||||| ||||||||||||||| ||||||| || | |||||||    
T  27243104 tccaaatcatggctagttcaatgcttgtcaaggttacttgtttggctatgatatgcttggttttgggcattccactagccaatgctg 27243190  T

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Target: chr7; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 107 - 212
Target Start/End: Original strand, 27271563 - 27271668
Alignment:
Q  107 catttcctctatcaaaatctccaaatcatggctagctcaatgcttgttaagattacttgcttgtctatgctatgcttggttttggccattccattatcaa 206  Q
    ||||||||||  |||||| |||||||||||||||| ||||| ||||| ||| ||||||| ||| ||||| ||||||||||||||  ||||||| || | |    
T  27271563 catttcctcttccaaaatttccaaatcatggctagttcaatccttgtcaaggttacttgtttggctatgatatgcttggttttgagcattccactagcca 27271662  T
Q  207 atgctg 212  Q
    ||||||    
T  27271663 atgctg 27271668  T

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Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 107 - 212
Target Start/End: Original strand, 27249054 - 27249159
Alignment:
Q  107 catttcctctatcaaaatctccaaatcatggctagctcaatgcttgttaagattacttgcttgtctatgctatgcttggttttggccattccattatcaa 206  Q
    ||||||||||   ||||| |||||||||||||||| |||||| |||| ||| ||||||| ||| ||||| ||||||| ||||||| ||||||| || | |    
T  27249054 catttcctcttcgaaaatttccaaatcatggctagttcaatgtttgtcaaggttacttgtttggctatgatatgcttagttttgggcattccactagcta 27249153  T
Q  207 atgctg 212  Q
    ||||||    
T  27249154 atgctg 27249159  T

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Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 133 - 212
Target Start/End: Original strand, 27312620 - 27312699
Alignment:
Q  133 catggctagctcaatgcttgttaagattacttgcttgtctatgctatgcttggttttggccattccattatcaaatgctg 212  Q
    |||||||||||||||| |||| |||||||||| |||| ||||| ||||||||||||||| || ||| ||| | |||||||    
T  27312620 catggctagctcaatgtttgtcaagattactttcttggctatgatatgcttggttttgggcactcccttagccaatgctg 27312699  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 27246136 - 27246193
Alignment:
Q  130 aatcatggctagctcaatgcttgttaagattacttgcttgtctatgctatgcttggtt 187  Q
    ||||||||||| ||||||| |||| ||| ||||||||||| || || |||||||||||    
T  27246136 aatcatggctacctcaatgtttgtcaaggttacttgcttgactgtgatatgcttggtt 27246193  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 130 - 199
Target Start/End: Complemental strand, 14884356 - 14884287
Alignment:
Q  130 aatcatggctagctcaatgcttgttaagattacttgcttgtctatgctatgcttggttttggccattcca 199  Q
    |||||||||||| |||||||||   ||| ||||||| ||| ||||| ||||||||||||||| |||||||    
T  14884356 aatcatggctagttcaatgcttaccaaggttacttgtttggctatgttatgcttggttttgggcattcca 14884287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 14890011 - 14889938
Alignment:
Q  126 tccaaatcatggctagctcaatgcttgttaagattacttgcttgtctatgctatgcttggttttggccattcca 199  Q
    |||||||||||||||| |||||||||   ||| ||||||| ||| ||||| ||||||||||||||  |||||||    
T  14890011 tccaaatcatggctagttcaatgcttaccaaggttacttgtttggctatgatatgcttggttttgagcattcca 14889938  T

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