View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1141_low_22 (Length: 427)
Name: NF1141_low_22
Description: NF1141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1141_low_22 |
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| [»] scaffold0179 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 95 - 380
Target Start/End: Original strand, 928404 - 928689
Alignment:
| Q |
95 |
cattaatgcatattgctttgcaacaaagaaacttgctttctatactttctatgaagttgatgccatcttctctgctggtgtaaggttcccaagagcagaa |
194 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
928404 |
cattaatgcatattgctttgcaacaaagaaacttgctttctatactttctatgaagttgatgccatcttctctgctggtgtaaggttcccaagagcagaa |
928503 |
T |
|
| Q |
195 |
cttggccaccttttcatcagtatgccacaccattacatcatcaaggtcagaaagattaaaggatcggagtgtgatttggttcaaatcaatgatttcttct |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
928504 |
cttggccaccttttcatcagtatgccacaccattacatcatcaaggtcagaaagattaaaggatcggagtgtgatttggttcaaatcaatgatttcttct |
928603 |
T |
|
| Q |
295 |
ttggcacatggttttgaagaaataaaagtttcctccatcacagaattacttgtgtttcttttatgagttattttgaggctatttat |
380 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
928604 |
ttgccacatggttttgaagaaataaaagtttcctccatcacagaattacttttgtttcttttatgagttattttgaggctatttat |
928689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 97 - 369
Target Start/End: Original strand, 939331 - 939605
Alignment:
| Q |
97 |
ttaatgcatattgctttgcaacaaagaaacttgctttctatactttctatgaagttgatgccatcttctctgctggtgtaaggttcccaagagcagaact |
196 |
Q |
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|||| ||||||||||||||| || ||||||||| || |||| |||| |||||| ||||||| | |||| |||||||||| ||||||||||||||||||| |
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| T |
939331 |
ttaaggcatattgctttgcaccatagaaacttgtttggtatattttcaatgaagctgatgccttgttctttgctggtgtatggttcccaagagcagaact |
939430 |
T |
|
| Q |
197 |
tggccaccttttcatcagtatgccacaccattacatcatcaaggtcagaaagattaaaggatcggagtgtgatttggttcaaatcaatgatttcttcttt |
296 |
Q |
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||||||| ||||||||||| ||| ||||| | |||||||||||||||||||| ||| | |||||||||||||||||||||||||||| ||| ||| || |
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| T |
939431 |
tggccactttttcatcagttctccataccatgagatcatcaaggtcagaaagatgaaaaggtcggagtgtgatttggttcaaatcaatgctttgttcatt |
939530 |
T |
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| Q |
297 |
ggcacatggttttgaagaaataaaagtttcctccatcacaga--attacttgtgtttcttttatgagttattttg |
369 |
Q |
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| ||| |||||| ||||||||||||||||||||||| ||||| | ||||||||||||||| ||||||| |||| |
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| T |
939531 |
gccacttggtttggaagaaataaaagtttcctccataacagaacaacacttgtgtttcttttctgagttaatttg |
939605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 130 - 332
Target Start/End: Original strand, 926122 - 926324
Alignment:
| Q |
130 |
ctttctatactttctatgaagttgatgccatcttctctgctggtgtaaggttcccaagagcagaacttggccaccttttcatcagtatgccacaccatta |
229 |
Q |
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||||||||| |||| |||||||||||||| | ||| |||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||| |
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| T |
926122 |
ctttctatattttcaatgaagttgatgccttggtctttgctggtgtaaggttccccc---cagaacttggccactttttcatcagtctgccacaccatta |
926218 |
T |
|
| Q |
230 |
catcatcaaggtcagaaagattaaaggatcggagtgtgatttggttcaaatcaatgat---ttcttctttggcacatggttttgaagaaataaaagtttc |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| || |||||||||||||| |
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| T |
926219 |
catcatcaaggtcagaaagattaaaggatcggagtgtgatttggttcaaatcgatgatctcttcttctttggcacatggtttggaggaaataaaagtttc |
926318 |
T |
|
| Q |
327 |
ctccat |
332 |
Q |
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||||| |
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| T |
926319 |
ttccat |
926324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 95 - 333
Target Start/End: Original strand, 924049 - 924287
Alignment:
| Q |
95 |
cattaatgcatattgctttgcaacaaagaaacttgctttctatactttctatgaagttgatgccatcttctctgctggtgtaaggttcccaagagcagaa |
194 |
Q |
| |
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|||| ||||||||||||||||| || ||||||||| | | ||| |||| ||||||||||||||||| || |||||||||| |||||||||||||||| |
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| T |
924049 |
cattgatgcatattgctttgcaccatagaaacttggtagcaatattttcaatgaagttgatgccatcatccttgctggtgtagagttcccaagagcagaa |
924148 |
T |
|
| Q |
195 |
cttggccaccttttcatcagtatgccacaccattacatcatcaaggtcagaaagattaaaggatcggagtgtgatttggttcaaatcaatgatttcttct |
294 |
Q |
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||||||||| ||||||||||| ||| | ||| | ||||||||||||||||||||||| || |||||||||||||||| | | |||||| | |||||| |
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| T |
924149 |
cttggccactttttcatcagttgtccatatcatgagatcatcaaggtcagaaagattaaggggtcggagtgtgatttgggttagatcaattctctcttct |
924248 |
T |
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| Q |
295 |
ttggcacatggttttgaagaaataaaagtttcctccatc |
333 |
Q |
| |
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||||||| |||||| ||||||||| ||||| ||||||| |
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| T |
924249 |
ttggcacctggtttggaagaaatagaagttatctccatc |
924287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 102 - 298
Target Start/End: Original strand, 935547 - 935740
Alignment:
| Q |
102 |
gcatattgctttgcaacaaagaaacttgctttctatactttctatgaagttgatgccatcttctctgctggtgtaaggttcccaagagcagaacttggcc |
201 |
Q |
| |
|
||||||||||||||||| ||| |||||| | | ||| ||| |||||||||||||| | ||| |||||||||||||||||| |||||||||||| |
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| T |
935547 |
gcatattgctttgcaacgtagatacttgcctgccatatttttgatgaagttgatgccttggtctttgctggtgtaaggttccccc---cagaacttggcc |
935643 |
T |
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| Q |
202 |
accttttcatcagtatgccacaccattacatcatcaaggtcagaaagattaaaggatcggagtgtgatttggttcaaatcaatgatttcttctttgg |
298 |
Q |
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|| ||||||||||| ||||||||||| | |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
935644 |
actttttcatcagtgtgccacaccatgagatcatcgaggtcagaaagattaaaagatcggagtgtgatttggttcaaatcaatgatctcttctttgg |
935740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 373 - 422
Target Start/End: Original strand, 6617 - 6666
Alignment:
| Q |
373 |
ctatttatttttgggtgtttgattattggtgaatttgtgtctgtgctgct |
422 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6617 |
ctatttgtttttgggtgtttgattattggtgaatttgtgtctgtgttgct |
6666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 249
Target Start/End: Original strand, 46648373 - 46648477
Alignment:
| Q |
145 |
atgaagttgatgccatcttctctgctggtgtaaggttcccaagagcagaacttggccaccttttcatcagtatgccacaccattacatcatcaaggtcag |
244 |
Q |
| |
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||||||| |||| ||||||| || | || ||||| ||||||| ||| |||||||||| ||||||||| || |||||||| ||||||||||| |||| |
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| T |
46648373 |
atgaagtcaatgcaatcttctttgtttgtataaggctcccaagtgcaatacttggccactttttcatcactagtccacaccaaaacatcatcaagatcag |
46648472 |
T |
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| Q |
245 |
aaaga |
249 |
Q |
| |
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||||| |
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| T |
46648473 |
aaaga |
46648477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 283
Target Start/End: Original strand, 46656731 - 46656839
Alignment:
| Q |
175 |
taaggttcccaagagcagaacttggccaccttttcatcagtatgccacaccattacatcatcaaggtcagaaagattaaaggatcggagtgtgatttggt |
274 |
Q |
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||||||||||||| ||| |||||||||| ||| ||||| || ||||| ||| ||||||||||| ||||||||| ||| || ||| || | ||||||| |
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| T |
46656731 |
taaggttcccaagtgcaatacttggccacttttgcatcactagtccacaacataacatcatcaagatcagaaagactaatgggtcgaagagagatttggc |
46656830 |
T |
|
| Q |
275 |
tcaaatcaa |
283 |
Q |
| |
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|||| |||| |
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|
| T |
46656831 |
tcaagtcaa |
46656839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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