View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1141_low_24 (Length: 400)
Name: NF1141_low_24
Description: NF1141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1141_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 163 - 375
Target Start/End: Original strand, 2706715 - 2706927
Alignment:
| Q |
163 |
ccttcaatttcatacaaacttaatgatggcttattttccttttgtttggtggtgaaccaattgcttagcctcttatatcttgatttttggttcttcaact |
262 |
Q |
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| T |
2706715 |
ccttcaatttcatacaaacttaatgatggcttattttccttttgtttggtggtgaaccaattgcttaacctcttatatcttgatttttggttcttcaact |
2706814 |
T |
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| Q |
263 |
ccatggcttataagattttggaaggatgatatatatcaaggtttgatttcttccatgcaagccacaaacacactaagaccaatatctatgacaagaagga |
362 |
Q |
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| T |
2706815 |
ccatggcttataagattttggaaggatgatatatatcaaggtttgatttcttccatgcaagccacaaacacactaagaccaatatctatgacaagaagga |
2706914 |
T |
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| Q |
363 |
aaaaggttaaaac |
375 |
Q |
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| T |
2706915 |
aaaaggttaaaac |
2706927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 40 - 121
Target Start/End: Original strand, 2706565 - 2706646
Alignment:
| Q |
40 |
catctccaacaatatctacaacgtaaaatacaaacataataaaattaacataacaacttgtacttatgcatttttttctagg |
121 |
Q |
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| T |
2706565 |
catcttcaactatatctacaacgtaaaatacaaacataataaaattaacataacaacttgtacttatgcatttttttctagg |
2706646 |
T |
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