View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1141_low_28 (Length: 379)
Name: NF1141_low_28
Description: NF1141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1141_low_28 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 3 - 366
Target Start/End: Original strand, 29412527 - 29412889
Alignment:
| Q |
3 |
tttcctctttttcagtcaaaccaaaatctggtagagttgtaccttcctcaaactgttttccatgaatagataatctgttgattttctcatcataatattt |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29412527 |
tttcctctttttcagtcaaaccaaaatctggtagagttgtaccttcctcaaactgttttccatgaatagataatctgttgattttctcatcataatattt |
29412626 |
T |
|
| Q |
103 |
catatcctcaaactccctttgacacatccaatccttctaatgtcaagttttcttcatcctttccactaggcttggctgcttcttcataagtctcttcaaa |
202 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
29412627 |
catatcctcaaactcc-tttgacacatccaatccttctaatgtcaagttttcttcatcctttccactaggcttggatgcttcttcataagtctcttcaaa |
29412725 |
T |
|
| Q |
203 |
ggcaacacctttgtctccggattcattctgaatctcactatagtccatttccaatggcaagttttcatgcttacttggtggaaaggcgaagtgaccagac |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29412726 |
ggcaacacctttgtctccggattcattctgaatctcactatagtccttttccaatggcaagttttcatgcttacttggtggaaaggcgaagtgaccagac |
29412825 |
T |
|
| Q |
303 |
atgaacaaagtgttcgatgtctcagcttcatttattgcgtatgcatcttccttgtcatcatcct |
366 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29412826 |
atgaacaaagcgttcgatgtctcagcttcatttattgcgtatgcatcttccttgtcatcatcct |
29412889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 3 - 366
Target Start/End: Complemental strand, 10161653 - 10161290
Alignment:
| Q |
3 |
tttcctctttttcagtcaaaccaaaatctggtagagttgtaccttcctcaaactgttttccatgaatagataatctgttgattttctcatcataatattt |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10161653 |
tttcctctttttcagtcaaaccaaaatctggtagagttgtaccttcctcaaactattttccatgaatagataatctgttgattttctcatcataatattt |
10161554 |
T |
|
| Q |
103 |
catatcctcaaactccctttgacacatccaatccttctaatgtcaagttttcttcatcctttccactaggcttggctgcttcttcataagtctcttcaaa |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10161553 |
catatcctcaaactccctttgacacatccaatccttctaatgtcaagttttcttcatcctttccactaggcttggctgcttcttcataagtctcttcaaa |
10161454 |
T |
|
| Q |
203 |
ggcaacacctttgtctccggattcattctgaatctcactatagtccatttccaatggcaagttttcatgcttacttggtggaaaggcgaagtgaccagac |
302 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10161453 |
ggcaacacctttgtctccggattcattatgaatctcactatagtctgtttccaatggcaagttttcatgcttacttggtggaaaggcgaagtgaccagac |
10161354 |
T |
|
| Q |
303 |
atgaacaaagtgttcgatgtctcagcttcatttattgcgtatgcatcttccttgtcatcatcct |
366 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10161353 |
atgaacaaagcgttcgatgtctcagcttcatttattgcgtatgcatcttccttgtcatcatcct |
10161290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University