View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1141_low_31 (Length: 356)
Name: NF1141_low_31
Description: NF1141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1141_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 84 - 337
Target Start/End: Complemental strand, 2190739 - 2190487
Alignment:
| Q |
84 |
catcaacaaacaggaacatgcaccaaatcatagagctatgaagaaaaaccagtacgatagagcaaaatccagttcactcaatcgaacaacaacaacaact |
183 |
Q |
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| T |
2190739 |
catcaacgaacaggaacaagcaccaaatcatagagttatgaagaaaaaccagtacaatagagcaaaacccagttcactcaatcgaacaacaacagcaact |
2190640 |
T |
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| Q |
184 |
aaatcaacaaaaatcgaagcaaaataatggaattgagagtaaggataaggcttaggaacaagagagaagnnnnnnnnnnnnnnnngagttcgcagaacca |
283 |
Q |
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| T |
2190639 |
gaatcagcaaaaatcaaagcaaaataatggaattgagagtaaggatacggctcaggaacaagagagaagaaaaaacttgaaaaaagagttcgcagaacca |
2190540 |
T |
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| Q |
284 |
tcgtcggagtgttcgccggaaaaagagaagcctcaccggaaatcacatctcatt |
337 |
Q |
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||||||||||||||||| |||||||||||||||||| |||||||| ||||||| |
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| T |
2190539 |
tcgtcggagtgttcgcc-gaaaaagagaagcctcactagaaatcacctctcatt |
2190487 |
T |
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