View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1141_low_35 (Length: 341)
Name: NF1141_low_35
Description: NF1141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1141_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 39996563 - 39996896
Alignment:
| Q |
1 |
caccgcagttaaaatttgtgagttgaacgataaccagtggaatatcttccattgggagtgtgtaatcaatgtgtgggataaggtaacggtaatattctga |
100 |
Q |
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| T |
39996563 |
caccgcaattaaaatttgtgagttgaaagataaccagtggaatatcttccattgggagtgtgtaatcaatgtgtgggataaggtaacggtaatattccga |
39996662 |
T |
|
| Q |
101 |
agaaggtgaaaagtcacctagttcggataatgttaacgaggattgtgcttcgatgaattgaacacccaatgagttgcattcaagatcaaaacgaccattt |
200 |
Q |
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| T |
39996663 |
agaaggtgaaaagtcacctagttcggataatgttaacgaggattgtgcttcgatgaattgaacacccaatgagttgcattcgagatcaaaacgaccattt |
39996762 |
T |
|
| Q |
201 |
cctttcgagtgtaaacgaccggcaagtggataaaacggcacaaggactttgcttaatgactctttcaaagtggtggcgattttagtgggggagggaagcc |
300 |
Q |
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| T |
39996763 |
cctttcgagtgtaaacgaccggcaagtggataaaacggcacaaggactttgcttaatgactctttcaaagtggtggcgattttagtgggggaggtaagcc |
39996862 |
T |
|
| Q |
301 |
agttttttgggggctggtaaaagtatattcttgg |
334 |
Q |
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| T |
39996863 |
agttttttgggggctggtaaaagtatattgttgg |
39996896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 12 - 325
Target Start/End: Complemental strand, 53037021 - 53036708
Alignment:
| Q |
12 |
aaatttgtgagttgaacgataaccagtggaatatcttccattgggagtgtgtaatcaatgtgtgggataaggtaacggtaatattctgaagaaggtgaaa |
111 |
Q |
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||||||||||| ||||| ||||||| |||||| ||||| |||||| |||||||||| ||||| |||||||||||| | |||||||| |||||||||||| |
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| T |
53037021 |
aaatttgtgagctgaacaataaccaatggaatgtcttcaattgggcgtgtgtaatcgatgtgcgggataaggtaaggataatattcacaagaaggtgaaa |
53036922 |
T |
|
| Q |
112 |
agtcacctagttcggataatgttaacgaggattgtgcttcgatgaattgaacacccaatgagttgcattcaagatcaaaacgaccatttcctttcgagtg |
211 |
Q |
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||||||||||||||||||| |||||||| |||| |||||||||||||||| ||||||||||||||||||| | |||||||||||| || ||||| | || |
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| T |
53036921 |
agtcacctagttcggataaggttaacgacgattctgcttcgatgaattgagcacccaatgagttgcattcgacatcaaaacgaccgctttctttccattg |
53036822 |
T |
|
| Q |
212 |
taaacgaccggcaagtggataaaacggcacaaggactttgcttaatgactctttcaaagtggtggcgattttagtgggggagggaagccagttttttggg |
311 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||| |||||| |||| |||| |
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| T |
53036821 |
taaacgaccggctagtggataaaacggcacaaggactttgctcaatgagtctttcaaagtggtggcgattttattgggggaggtaagccatttttgtggg |
53036722 |
T |
|
| Q |
312 |
ggctggtaaaagta |
325 |
Q |
| |
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|| |||||||||| |
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| T |
53036721 |
gggcggtaaaagta |
53036708 |
T |
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