View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1141_low_40 (Length: 317)
Name: NF1141_low_40
Description: NF1141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1141_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 6e-65; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 98 - 227
Target Start/End: Original strand, 1855439 - 1855568
Alignment:
| Q |
98 |
ggttgtgacagttacggatatctcaacagtaatttcaagggtgccacttattctacaggatgcttaacaagatgttatgattttgatactaaaatggtaa |
197 |
Q |
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| T |
1855439 |
ggttgtgacagtttcggatatctcaacagtaatttcaagggtgccacttattctacaggatgcttaacaagatgttatgattttgatactaaaatggtaa |
1855538 |
T |
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| Q |
198 |
ttggaaataacactggaaagtgcacaggtt |
227 |
Q |
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| T |
1855539 |
ttggaaataacactggaaagtgcacaggtt |
1855568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 98 - 227
Target Start/End: Complemental strand, 1817752 - 1817623
Alignment:
| Q |
98 |
ggttgtgacagttacggatatctcaacagtaatttcaagggtgccacttattctacaggatgcttaacaagatgttatgattttgatactaaaatggtaa |
197 |
Q |
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| T |
1817752 |
ggttgcgacagttacggatatctcaacagtaatttcacaggtggcacttattcaacagggtgcttaacaagatgttatgattttaaacctaaaatagtaa |
1817653 |
T |
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| Q |
198 |
ttggaaataacactggaaagtgcacaggtt |
227 |
Q |
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| T |
1817652 |
ttgggaataacactggaaaatgcacaggtt |
1817623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 176
Target Start/End: Complemental strand, 9220589 - 9220511
Alignment:
| Q |
98 |
ggttgtgacagttacggatatctcaacagtaatttcaagggtgccacttattctacaggatgcttaacaagatgttatg |
176 |
Q |
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| T |
9220589 |
ggttgtgacagttacggttatctcaacagtatttacaacgaagaaacatattcaaccggttgcttaacaagatgttatg |
9220511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 98 - 225
Target Start/End: Original strand, 37566907 - 37567041
Alignment:
| Q |
98 |
ggttgtgacagttacggatatctcaacagtaatttcaagggtgccacttattctacaggatgc-------ttaacaagatgttatgattttgatactaaa |
190 |
Q |
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| T |
37566907 |
ggttgcgacagttacggatatctcaacagtaatttcaagggtgccacttattctacaggatgcttaacagttaacaagatgttatgattttgatcctaaa |
37567006 |
T |
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| Q |
191 |
atggtaattggaaataacactggaaagtgcacagg |
225 |
Q |
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| T |
37567007 |
atggtaactgggaataacactggaaaatgcacagg |
37567041 |
T |
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