View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1141_low_42 (Length: 314)
Name: NF1141_low_42
Description: NF1141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1141_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 30 - 299
Target Start/End: Original strand, 47067734 - 47068003
Alignment:
| Q |
30 |
ttttgtagcttaaacagttactgcacattcaaggatgataaaccattatgcaactgtctcacgggttataaatttatagatgcaaatgaaaagactctcg |
129 |
Q |
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| T |
47067734 |
ttttgtagcttaaacagttactgcacattcaaggatgataaaccattatgcaactgtctcacgggttataaatttatagatgcaaatgaaaagactctcg |
47067833 |
T |
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| Q |
130 |
gctgcgaaaggaactattcgaaagcagagtgtagagctgagaaagatggtttggccttttatgatatggtcccaatgaacaatattgtatggaaagacca |
229 |
Q |
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| T |
47067834 |
gctgcgaaaggaactattcgaaagcagagtgtagagctgagaaagatggtttggccttttatgatatggtcccaatgaacaatattgtatggaaagacca |
47067933 |
T |
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| Q |
230 |
tccttattttgagactgaggatatattatcggaaaaagaatgctcatttgcttgtttggttgattgcaac |
299 |
Q |
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| T |
47067934 |
tccttattttgagactgaggatatattatcggaaaaagaatgctcatttgcttgtttggttgattgcaac |
47068003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 42 - 298
Target Start/End: Complemental strand, 47076581 - 47076325
Alignment:
| Q |
42 |
aacagttactgcacattcaaggatgataaaccattatgcaactgtctcacgggttataaatttatagatgcaaatgaaaagactctcggctgcgaaagga |
141 |
Q |
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| T |
47076581 |
aacagtttctgcacattcgatgacgacaaaccagtatgcaattgtctcccgggttataaacttatagatgcaaatgaagatactcttggctgtgaaagga |
47076482 |
T |
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| Q |
142 |
actattcgaaagcagagtgtagagctgagaaagatggtttggccttttatgatatggtcccaatgaacaatattgtatggaaagaccatccttattttga |
241 |
Q |
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| T |
47076481 |
actattcaacatcagagtgtagaggtgacaaatatggtgtggccttttataacatggtcccaatgaccaatcttgtttggaatgaccatccttatttcaa |
47076382 |
T |
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| Q |
242 |
gactgaggatatattatcggaaaaagaatgctcatttgcttgtttggttgattgcaa |
298 |
Q |
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||| ||||| | ||| ||| ||||||||| ||||||||||||| |||||||||| |
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| T |
47076381 |
agatgatgatatgtcatcagaagaagaatgcttatttgcttgtttgattgattgcaa |
47076325 |
T |
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