View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1141_low_43 (Length: 306)
Name: NF1141_low_43
Description: NF1141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1141_low_43 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 30 - 297
Target Start/End: Original strand, 9149532 - 9149799
Alignment:
| Q |
30 |
cattaaagttcccatatccctttaatttctcccataatttggatgtgtcccatcagtttaaagaacatccaactttctgtagtgacaagaaggagaaaag |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9149532 |
cattaaagttcccatatccctttaatttctcccataatttggatgtgtcccatcagtttaaagaacatccaactttctgtagtgacaagaaggagaaaag |
9149631 |
T |
|
| Q |
130 |
cccgtatgcaccgctgccataagaagttagagaatgactgttttaacttatatttaagttatcattcttagtcgattttgttccactgagctactgcaag |
229 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9149632 |
cccgtatgcaccgctgccataagaagttggagaatgactgttttaacttatatttaagttatcattcttagtcgattttgttccactgagctactgcaag |
9149731 |
T |
|
| Q |
230 |
agtaataaatttgagacattaattgttgaagcagtcaaatgggaatatttacaaaaacctagtataat |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9149732 |
agtaataaatttgagacattaattgttgaagcagtcaaatgggaatatttacaaaaacctagtataat |
9149799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University