View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1141_low_56 (Length: 223)
Name: NF1141_low_56
Description: NF1141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1141_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 1205019 - 1205072
Alignment:
| Q |
84 |
gcaaaggtggtagattggtgttttgtgatcaatgaaagaaactgtgtggctcaa |
137 |
Q |
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| T |
1205019 |
gcaaaggtggtagattggtgttttgtgatcaatgaaagaaactgcgtggctcaa |
1205072 |
T |
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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 223
Target Start/End: Original strand, 1205192 - 1205227
Alignment:
| Q |
188 |
taacaaatttatatatgtacacttttctcattctcc |
223 |
Q |
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| T |
1205192 |
taacaaatttatatatgtacacttttctcattctcc |
1205227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 181
Target Start/End: Original strand, 1205086 - 1205118
Alignment:
| Q |
149 |
ttgttacaatttccgtgtaatattattacataa |
181 |
Q |
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| T |
1205086 |
ttgttacaatttgcgtgtaatattattacataa |
1205118 |
T |
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