View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1141_low_58 (Length: 218)
Name: NF1141_low_58
Description: NF1141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1141_low_58 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 39996094 - 39996311
Alignment:
| Q |
1 |
taccctttaggtaaattaggttccacacgacgcctccaatcaacgcaaacaccaagcgcggttggttggtcattttcatgctctcttgctttacatgcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39996094 |
taccctttaggtaaattaggttccacacgacgcctccaatcaacacaaacaccaagcgcggttggttggtcatttttatgctctcttgctttacatgcac |
39996193 |
T |
|
| Q |
101 |
ttctccaaatatgaccggttactgtttcatacctcgaataacctcgaccattactaggtttattccaactctcatttgcggtttttctcaacttttcaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39996194 |
ttctccaaatatgaccggttactgtttcatacctcgaataacctcgaccattactaggtttattccaactctcatttgcggtttttctcaacttttcaac |
39996293 |
T |
|
| Q |
201 |
ttgtgttttactcaagtt |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
39996294 |
ttgtgttttactcaagtt |
39996311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 53037498 - 53037285
Alignment:
| Q |
1 |
taccctttaggtaaattaggttccacacgacgcctccaatcaacgcaaacaccaagcgcggttggttggtcattttcatgctctcttgctttacatgcac |
100 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| |||||||||||| ||||||||||||| ||| ||||||||||| ||||| |||| ||||||| ||||| |
|
|
| T |
53037498 |
tacccttttggtaaattaggctccacacgattcctccaatcaacacaaacaccaagcgaagtttgttggtcatttgcatgccctctagctttacttgcac |
53037399 |
T |
|
| Q |
101 |
ttctccaaatatgaccggttactgtttcatacctcgaataacctcgaccattactaggtttattccaactctcatttgcggtttttctcaacttttcaac |
200 |
Q |
| |
|
||||||||| ||||||||||| |||||||| |||| ||||||||||||||| |||||||| | |||||| |||||||| |||||||||||||||||||| |
|
|
| T |
53037398 |
ttctccaaacatgaccggttaaggtttcatatctcgtataacctcgaccattgctaggtttttcccaactttcatttgctgtttttctcaacttttcaac |
53037299 |
T |
|
| Q |
201 |
ttgtgttttactca |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
53037298 |
ttgtgttttactca |
53037285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University