View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1141_low_9 (Length: 667)
Name: NF1141_low_9
Description: NF1141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1141_low_9 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 174 - 458
Target Start/End: Complemental strand, 7375950 - 7375681
Alignment:
| Q |
174 |
atcatttatttgatattatcaagctgaatacacaaaaatgagacgtaatttttaatatgaagttgtaatctgtagcactatatttgaataattgaaaacc |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7375950 |
atcatttatttgatattatcaagctgaatacacaaaaatgagacgtagtttttaatatgaagttgtaatctgtagcactatatttg-------------- |
7375865 |
T |
|
| Q |
274 |
tcaacagttactttgctgttggctgaattttatgatccatcacttgtcaagagagtttggaagccactttcattgaagttagttacattgatcacaataa |
373 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
7375864 |
----ctgttactttgctgttggctgaattttatgatccatcacttgtcaagagaatttggaagccactttctttgaagttagttacattgatcacaataa |
7375769 |
T |
|
| Q |
374 |
acacatgattgagag--aac-aaattcattacaaaaacaagatcattaaagaaagcaaaagtcatcaaatgcaaccattatgtctgtg |
458 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7375768 |
acacatgattgagagacaacaaaattcattacaaagacaagatcattaaacaaagcaaaagtcatcaaatgcaaccattatgtctgtg |
7375681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 30 - 138
Target Start/End: Complemental strand, 7376070 - 7375962
Alignment:
| Q |
30 |
ctatgacaaatcatattgtatataaattaaaaatcctcgaaggtttcatccctaaaaatgttagagaagtgctaggaaatggttgaaataatggaataga |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7376070 |
ctatgacaaatcatattgtatataaattaaaaatcctcgaaggtttcatccctaaaaatgttagagaagtgctaggaaatggttgaaataatggaataga |
7375971 |
T |
|
| Q |
130 |
aggatcact |
138 |
Q |
| |
|
||||||||| |
|
|
| T |
7375970 |
aggatcact |
7375962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 334 - 458
Target Start/End: Original strand, 7278029 - 7278158
Alignment:
| Q |
334 |
aagccactttcattgaagttagttacattgat--cacaataaacacatgattgagaga--acaaa-ttcattacaaaaacaagatcattaaagaaagcaa |
428 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||||| |
|
|
| T |
7278029 |
aagccactttcattgaagttagttacactgatatcacaataaacacatgattgagagacaacaaaattcattacaaagacaagatcattaaacaaagcaa |
7278128 |
T |
|
| Q |
429 |
aagtcatcaaatgcaaccattatgtctgtg |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
7278129 |
aagtcatcaaatgcaaccattatgtctgtg |
7278158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 491 - 564
Target Start/End: Original strand, 7278431 - 7278504
Alignment:
| Q |
491 |
cactttcctcaattccttcctcccccaaacttgttcccacactctcttccttctcttctacctccatattcttc |
564 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7278431 |
cactttccttaattccttcctccaccaaacttgttcccacactctcttccttctcttctacctccatcttcttc |
7278504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 491 - 564
Target Start/End: Complemental strand, 7375408 - 7375335
Alignment:
| Q |
491 |
cactttcctcaattccttcctcccccaaacttgttcccacactctcttccttctcttctacctccatattcttc |
564 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7375408 |
cactttccttaattccttcctccaccaaacttgttcccacactctcttccttctcttctacctccatcttcttc |
7375335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 58 - 192
Target Start/End: Complemental strand, 27766256 - 27766121
Alignment:
| Q |
58 |
aaaaatcctcgaaggtttcatccctaaaaatgttagagaagtgctaggaaatggttgaaataatggaatagaaggatcactatgaatatagctcttgata |
157 |
Q |
| |
|
||||||||||||||||| ||||||| |||||| ||| | ||| | ||||||||||||| || | |||||| ||||||||||||| ||||||||||| | |
|
|
| T |
27766256 |
aaaaatcctcgaaggttccatccctgaaaatgctagggg-gtgtttggaaatggttgaagtagttgaataggaggatcactatgactatagctcttggtt |
27766158 |
T |
|
| Q |
158 |
aatttaccaa--gtgaaaatcatttatttgatattat |
192 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||| |
|
|
| T |
27766157 |
aatttaccaaagatgaaaatgatttatttgatattat |
27766121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 208817 - 208873
Alignment:
| Q |
98 |
gtgctaggaaatggttgaaataatggaatagaaggatcactatgaatatagctcttg |
154 |
Q |
| |
|
||||| ||||||||||||| |||| |||||| ||||||||||||| |||||| |||| |
|
|
| T |
208817 |
gtgctcggaaatggttgaagtaattgaataggaggatcactatgactatagcccttg |
208873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 192
Target Start/End: Complemental strand, 11113319 - 11113229
Alignment:
| Q |
104 |
ggaaatggttgaaataatggaatagaaggatcactatgaatatagctcttgataaatttaccaa--gtgaaaatcatttatttgatattat |
192 |
Q |
| |
|
|||||| ||||||||| | |||||| | ||||||||||| |||| | ||| |||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
11113319 |
ggaaatagttgaaatagttgaataggaagatcactatgactataacatttggtaaatttaccaaagatgaaaatgatttatttgatattat |
11113229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University