View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11420_high_21 (Length: 284)
Name: NF11420_high_21
Description: NF11420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11420_high_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 274
Target Start/End: Complemental strand, 3855573 - 3855319
Alignment:
| Q |
20 |
ggcttcaccctgtagtcaatgggtttgttgatcatgtcgatctcacttttttgcagcactcttccactacccccatttgcttgccacatggcattctaac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| |
|
|
| T |
3855573 |
ggcttcaccctgtagtcaatgggtttgttgatcatgtcgatctcacttttttgcagcactcttccactacccccatttgcttcccaggtcccattctaac |
3855474 |
T |
|
| Q |
120 |
ttattcacctcttgttgttttgaacttgaatgggaatggggtcttaactatacaccatgttcataaacgttttactcatttgcccgaactcaaaaaactc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||| | |||||||||||||| |||| ||||||||| |
|
|
| T |
3855473 |
ttattcacctcttgttgttttgaacttgaatgggaatggggtcttaatgatataccatgttgataaatatcttactcatttgcccaaacttaaaaaactc |
3855374 |
T |
|
| Q |
220 |
cacatgacaaaggttcgttttcgaaagcttaaatatcttattaagattctctctg |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3855373 |
cacatgacaaaggttcgttttcgaaagcttaaatatcttattaagattctctctg |
3855319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 52 - 274
Target Start/End: Original strand, 4141082 - 4141304
Alignment:
| Q |
52 |
catgtcgatctcacttttttgcagca---ctcttccactacccccatttgcttgccacatggcattctaacttattcacctcttgttgttttgaacttga |
148 |
Q |
| |
|
||||| ||| |||||||||||||||| ||||||| ||||||| |||| ||||||| || |||||| || |||| ||||||||||||||||||||| |
|
|
| T |
4141082 |
catgttgatttcacttttttgcagcagcactcttccgctaccccgatttacttgccaaataacattct---ttgttcaactcttgttgttttgaacttga |
4141178 |
T |
|
| Q |
149 |
atgggaatggggtcttaactatacaccatgttcataaacgttttactcatttgcccgaactcaaaaaactccacatgacaaaggttcgttttcgaaagct |
248 |
Q |
| |
|
||||||||||||| ||||| ||| || |||| || || || |||| || ||||| | ||| |||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
4141179 |
atgggaatggggtgttaacaatagactgtgtttatgaatcttatactaatctgcccaacctcgaaaaactccacatgacaaaggttcattttctaaagct |
4141278 |
T |
|
| Q |
249 |
taaatatcttattaagattctctctg |
274 |
Q |
| |
|
||||||||||||| |||||||||||| |
|
|
| T |
4141279 |
taaatatcttattcagattctctctg |
4141304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 148 - 274
Target Start/End: Original strand, 1881932 - 1882058
Alignment:
| Q |
148 |
aatgggaatggggtcttaactatacaccatgttcataaacgttttactcatttgcccgaactcaaaaaactccacatgacaaaggttcgttttcgaaagc |
247 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||| | ||||| |||||||| | ||||||||||||||| | |||| ||||| ||||| ||||| |
|
|
| T |
1881932 |
aatgggaatggggtcttaactattgacaatgttcataactctcttactaatttgcccaacctcaaaaaactccacttcacaagggttcattttctaaagc |
1882031 |
T |
|
| Q |
248 |
ttaaatatcttattaagattctctctg |
274 |
Q |
| |
|
|| ||| |||||||||||||||||||| |
|
|
| T |
1882032 |
ttcaatttcttattaagattctctctg |
1882058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 1881510 - 1881567
Alignment:
| Q |
46 |
gttgatcatgtcgatctcacttttttgcagcactcttccactacccccatttgcttgc |
103 |
Q |
| |
|
||||| |||||| ||||||||||| || |||| ||| ||||||||||||||| ||||| |
|
|
| T |
1881510 |
gttgaacatgtcaatctcacttttctgtagcattctcccactacccccatttacttgc |
1881567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 272
Target Start/End: Original strand, 41541770 - 41541850
Alignment:
| Q |
192 |
tactcatttgcccgaactcaaaaaactccacatgacaaaggttcgttttcgaaagcttaaatatcttattaagattctctc |
272 |
Q |
| |
|
|||| |||||||| | ||||||||||||||| | |||| ||||| ||||| ||||||| ||| |||||||||||||||||| |
|
|
| T |
41541770 |
tactaatttgcccaacctcaaaaaactccacttcacaagggttcattttccaaagcttcaatttcttattaagattctctc |
41541850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 41541658 - 41541734
Alignment:
| Q |
83 |
ccactacccccatttgcttgccacatggcattctaacttattcacctcttgttgttttgaacttgaatgggaatggg |
159 |
Q |
| |
|
||||||||||||||| |||| | || ||||||| || |||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
41541658 |
ccactacccccatttacttgactcagaagattctaatttgttcaactcttgttgttttgaatttgaatgggaatggg |
41541734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University