View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11420_high_23 (Length: 273)
Name: NF11420_high_23
Description: NF11420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11420_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 82; Significance: 9e-39; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 61 - 142
Target Start/End: Original strand, 2387601 - 2387682
Alignment:
| Q |
61 |
aagtaagacatctaaatttccagccacgtatattagtcattgcagataaagtttgagttaagctttataacaaatatattat |
142 |
Q |
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| T |
2387601 |
aagtaagacatctaaatttccagccacgtatattagtcattgcagataaagtttgagttaagctttataacaaatatattat |
2387682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 72 - 142
Target Start/End: Original strand, 2387805 - 2387875
Alignment:
| Q |
72 |
ctaaatttccagccacgtatattagtcattgcagataaagtttgagttaagctttataacaaatatattat |
142 |
Q |
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| T |
2387805 |
ctaaatttccagccacgtgtaatattcattgcagataaagtttgagtaaagctttataacaaatatattat |
2387875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 2387752 - 2387797
Alignment:
| Q |
212 |
taatggatttcctaatgctaatactatagtatttgtataaagtagt |
257 |
Q |
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| T |
2387752 |
taatggatttcctaatgctaatactatagtatttgtataaagtagt |
2387797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 38
Target Start/End: Original strand, 2387548 - 2387578
Alignment:
| Q |
8 |
caaaggttaatggatctcttaatgcaaatac |
38 |
Q |
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| T |
2387548 |
caaaggttaatggatctcttaatgcaaatac |
2387578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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