View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11420_high_26 (Length: 251)
Name: NF11420_high_26
Description: NF11420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11420_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 39993812 - 39994037
Alignment:
| Q |
16 |
cattttccctatctgaatgtgtgttaccataggtcagagtccaatagtgaggagtaaggtatatttataaacaaaataggaacttaaatatcaaaactaa |
115 |
Q |
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| T |
39993812 |
cattttccctatctgaatgtgtgttaccataggtcaaagtccaatagtgaggagtaaggtatagtaataaacaaaataggaacttaaatatcaaaactaa |
39993911 |
T |
|
| Q |
116 |
cacatagaacaaaggatcaattactaataagaagtacaaaatcaaataatgtgatgagtcattttagagtatgtttgttaccatatatacgattagagta |
215 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39993912 |
cacatagaacaaaggatcgattactaataagaagtacaaaatcaaataatgtgatgagtcattttagagtatgtttgttaccatatatacgattagagta |
39994011 |
T |
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| Q |
216 |
tattttagtgtgatggttgatctctg |
241 |
Q |
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|||||| ||||||||||||||||||| |
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| T |
39994012 |
tattttcgtgtgatggttgatctctg |
39994037 |
T |
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