View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11420_high_27 (Length: 250)
Name: NF11420_high_27
Description: NF11420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11420_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 142 - 244
Target Start/End: Complemental strand, 50567742 - 50567640
Alignment:
| Q |
142 |
ttgaattgaagtaaaatctttgagaatcttgagatacctgtgttcttcttcagtccatggagttcctttcttcctctcgttatcaccgccatgtctctgc |
241 |
Q |
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| T |
50567742 |
ttgaattgaagtaaaatctttgagaatcttgagatacctgtgttcttcttcagtccatggagttcctttcttcctctcgttatcaccgccatgtctcggc |
50567643 |
T |
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| Q |
242 |
ttc |
244 |
Q |
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||| |
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| T |
50567642 |
ttc |
50567640 |
T |
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Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 50567885 - 50567813
Alignment:
| Q |
2 |
ccaagaacagattaaaattaattttttattcccattccttaaaattatggcatccaattccaaaaagttacgt |
74 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
50567885 |
ccaagaacagattaaaattaattttttattcctattccttaaaattatggcatccaattccaaaaagttacgt |
50567813 |
T |
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