View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11420_high_31 (Length: 239)
Name: NF11420_high_31
Description: NF11420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11420_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 24690683 - 24690904
Alignment:
| Q |
1 |
ccatcagtttgactttgccttggtgcaacctttacatggtgcatcaccttgaaccaagtgagctcgctacctaagaaaatgtcaaggtcataaaactttg |
100 |
Q |
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| T |
24690683 |
ccatcagtttgactttgccttggtgcaacctttacatggtgcatcaccttgaaccaagtgagctcgctacctaagaaaatgtcaaggtcataaaactttg |
24690782 |
T |
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| Q |
101 |
gaggggagggatggtcaatgttgagagtgattgtataatggatataaaatatcaacttgacattcaaaactaattcaattcagaaattcaataatcctgt |
200 |
Q |
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| T |
24690783 |
gaggggagggatggtcaatgttgagagtgattgtataatggatataaaatatcaacttgacattcaaaactaattcaattcagaaattcaataatcctgt |
24690882 |
T |
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| Q |
201 |
ttgatttattgtgtgagaataa |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
24690883 |
ttgatttattgtgtgagaataa |
24690904 |
T |
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Back To:
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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 10330688 - 10330785
Alignment:
| Q |
8 |
tttgactttgccttggtgcaacctttacatggtgcatcaccttgaa-ccaagtgagctcgctacctaagaaaatgtcaaggtcataaaactttggagg |
104 |
Q |
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| T |
10330688 |
tttgactttaccttagtgcaacctttacatggtgcatcacactgaacccaagtgaggtcactacctgagtcgatatcaaggtcataaagctttggagg |
10330785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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