View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11420_high_34 (Length: 226)
Name: NF11420_high_34
Description: NF11420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11420_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 15 - 208
Target Start/End: Complemental strand, 29448454 - 29448263
Alignment:
| Q |
15 |
caaaggaggacaaggataagttgaaatttgcaaaccaatcagagctatagttgcctttgcaaaatgtatgaacaaatcaaaattatgccttttaattttt |
114 |
Q |
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| T |
29448454 |
caaaggaggacaaggataagttgaaatttgcaaaccaatcagagctatagttgcctttgcaaaatgtatgaacaaatcaaaattatgccttttaattttt |
29448355 |
T |
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| Q |
115 |
ctgtaatgtacatggtttgaataatgagattatctttccatgttgaatatacaaacaaacctacaacatttacattaatcaaagtagacgacac |
208 |
Q |
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| T |
29448354 |
ctgtaatgt--atggtttgaataatgagattatctttccatgttgaatatacaaacaaaccaacaacatttacattaatcaaagtagacgacac |
29448263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 29456428 - 29456343
Alignment:
| Q |
14 |
gcaaaggaggacaaggataagttgaaatttgcaaaccaatcagagctatagttgcctttgcaaaatgtatgaacaaatcaaaattat |
100 |
Q |
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| T |
29456428 |
gcaaagaagggcaaggataagttgaagtttgcaaaccaatc-taacaatagttgccttcacaaaatgtatgaacaaatcaaatttat |
29456343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 8571551 - 8571406
Alignment:
| Q |
20 |
gaggacaaggataa-gttgaaatttgcaaaccaatcagagctatagttgcctttgcaaaatgtatgaacaaatcaaaattatgccttttaatttttctgt |
118 |
Q |
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| T |
8571551 |
gaggacaaggataaagttgaaattttcaaactaattgaatcaatagttgccttcacaaaatataagaacagatcaaaactatgccttttgattttattgt |
8571452 |
T |
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| Q |
119 |
aatgtacatgg-------tttgaataatgagattatctttccatgttg |
159 |
Q |
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| T |
8571451 |
aatgt--atggtttgaactttgaataatgagataatctttccatgttg |
8571406 |
T |
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