View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11420_high_8 (Length: 416)
Name: NF11420_high_8
Description: NF11420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11420_high_8 |
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| [»] scaffold0096 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 19 - 406
Target Start/End: Original strand, 12870379 - 12870765
Alignment:
| Q |
19 |
tattacccgaggtgtctctctatctccccaatctctcaacttttttgctattcccattcactcttatgttttcaatgccaaattctttcctcctctaact |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
12870379 |
tattacccgaggtgtctctctatctccccaatctctcaacttttttgctattcccattcactcttatgttttcaatgccaaactctttcctcctctaact |
12870478 |
T |
|
| Q |
119 |
ccttcttctttatgagagagcgatgaagtacctcatgtgtcgtgtcttgcttgctgttcatttggttatgcaaaccggattgtaaatcggtgaacttcta |
218 |
Q |
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||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
12870479 |
ccttcttttttctgagagagcgatgaagtacctcatgtgtcgtgtcttgcttgctgttcatttggttatgcaaaccggattgtaaatcggtgaacttgta |
12870578 |
T |
|
| Q |
219 |
acattctcaagaaaatcggtgaagtttattttgatgaaattgtgaggattggagtacgatggttgggatggaatttcttgaatcaattttaggtaccccc |
318 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
12870579 |
actttctcaagaaaatcggtgaagtttattttgatgaaattgtgaggattggagtacgattgttgggatggaatttcttgaatcaattttaggta-cccc |
12870677 |
T |
|
| Q |
319 |
ttctctcactattttcctctaatttctatcaatttgttagggtttagaaatctctaccactactttatatttgcaaatcatctttctt |
406 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12870678 |
ttctctcactatttttctctaatttctatcaatttgttagggtttagaaatctctaccactactttatatttgcaaatcatctttctt |
12870765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 19 - 406
Target Start/End: Original strand, 27765542 - 27765929
Alignment:
| Q |
19 |
tattacccgaggtgtctctctatctccccaatctctcaacttttttgctattcccattcactcttatgttttcaatgccaaattctttcctcctctaact |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
27765542 |
tattacccgaggtgtctctctatctccccaatctctcaacttttttgctattcccattcactcttatgttttcaatgccaaactctttcctcctctaact |
27765641 |
T |
|
| Q |
119 |
ccttcttctttatgagagagcgatgaagtacctcatgtgtcgtgtcttgcttgctgttcatttggttatgcaaaccggattgtaaatcggtgaacttcta |
218 |
Q |
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||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
27765642 |
ccttcttctttctgagagagcgatgaagtacctcacgtgtcgtgtcttgcttgctgttcatttggttatgcaaaccggattgtaaataggtgaacttata |
27765741 |
T |
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| Q |
219 |
acattctcaagaaaatcggtgaagtttattttgatgaaattgtgaggattggagtacgatggttgggatggaatttcttgaatcaattttaggtaccccc |
318 |
Q |
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|| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27765742 |
actttcttaagaaaatcggtgaagtttattttgatgaaattgtgaggattgaagtacgatggttgggatggaatttcttgaatcaattttaggtaccccc |
27765841 |
T |
|
| Q |
319 |
ttctctcactattttcctctaatttctatcaatttgttagggtttagaaatctctaccactactttatatttgcaaatcatctttctt |
406 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27765842 |
ttctctcactatttttctctaatttctatcaatttgttagggtttggaaatctctactactactttatatttgcaaatcatctttctt |
27765929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 259 - 406
Target Start/End: Complemental strand, 31770520 - 31770374
Alignment:
| Q |
259 |
tgtgaggattggagtacgatggttgggatggaatttcttgaatcaattttaggtacccccttctctcactattttcctctaatttctatcaatttgttag |
358 |
Q |
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|||||||||||||||||||||||| ||| |||| | ||| |||| |||||||||| | || ||||||||||||| ||||||||||||||||||||||| |
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| T |
31770520 |
tgtgaggattggagtacgatggttcagattgaatattttgcatcagttttaggtactcact-ctctcactatttttctctaatttctatcaatttgttaa |
31770422 |
T |
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| Q |
359 |
ggtttagaaatctctaccactactttatatttgcaaatcatctttctt |
406 |
Q |
| |
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|||||||||||||||||||| ||||||| |||||||| ||| |||||| |
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| T |
31770421 |
ggtttagaaatctctaccaccactttatctttgcaaaacatttttctt |
31770374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 321 - 406
Target Start/End: Complemental strand, 7607899 - 7607814
Alignment:
| Q |
321 |
ctctcactattttcctctaatttctatcaatttgttagggtttagaaatctctaccactactttatatttgcaaatcatctttctt |
406 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||| ||| |||||| |
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| T |
7607899 |
ctctcactatttttctctaatttctatcaatttgttaaggtttagaaatctctaccaccactttatctttgcaaaacatttttctt |
7607814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 406
Target Start/End: Original strand, 14184934 - 14184978
Alignment:
| Q |
362 |
ttagaaatctctaccactactttatatttgcaaatcatctttctt |
406 |
Q |
| |
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||||||||||||||||| ||||||| |||||||| ||| |||||| |
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| T |
14184934 |
ttagaaatctctaccaccactttatctttgcaaaacatttttctt |
14184978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 259 - 405
Target Start/End: Original strand, 41810794 - 41810939
Alignment:
| Q |
259 |
tgtgaggattggagtacgatggttgggatggaatttcttgaatcaattttaggtacccccttctctcactattttcctctaatttctatcaatttgttag |
358 |
Q |
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|||||||||||||||||||||||| ||| |||| | ||| |||| |||||||||| | || ||||||||||||| ||||||||||||||||||||||| |
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| T |
41810794 |
tgtgaggattggagtacgatggttcagattgaatattttgcatcagttttaggtactcact-ctctcactatttttctctaatttctatcaatttgttaa |
41810892 |
T |
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| Q |
359 |
ggtttagaaatctctaccactactttatatttgcaaatcatctttct |
405 |
Q |
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|||||||||||||||| ||| ||||||| |||||||| ||| ||||| |
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| T |
41810893 |
ggtttagaaatctctaacaccactttatctttgcaaaacatttttct |
41810939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 263 - 395
Target Start/End: Original strand, 28513 - 28643
Alignment:
| Q |
263 |
aggattggagtacgatggttgggatggaatttcttgaatcaattttaggtacccccttctctcactattttcctctaatttctatcaatttgttagggtt |
362 |
Q |
| |
|
||||||||||||| |||||| |||||||| | ||| |||| |||||||||| |||| ||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
28513 |
aggattggagtac-atggttcagatggaatattttgtatcagttttaggtactccct-ctctcactatttttctctaatttctatcaatttgttaaggtt |
28610 |
T |
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| Q |
363 |
tagaaatctctaccactactttatatttgcaaa |
395 |
Q |
| |
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|||||||||||||||| ||||||| |||||||| |
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| T |
28611 |
tagaaatctctaccaccactttatctttgcaaa |
28643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 263 - 395
Target Start/End: Complemental strand, 12538069 - 12537939
Alignment:
| Q |
263 |
aggattggagtacgatggttgggatggaatttcttgaatcaattttaggtacccccttctctcactattttcctctaatttctatcaatttgttagggtt |
362 |
Q |
| |
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||||||||||||| |||||| |||||||| | ||| |||| |||||||||| || | ||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
12538069 |
aggattggagtac-atggtttagatggaatattttgtatcagttttaggtactccat-ctctcactatttttctctaatttctatcaatttgttaaggtt |
12537972 |
T |
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| Q |
363 |
tagaaatctctaccactactttatatttgcaaa |
395 |
Q |
| |
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|||||||||| ||||| ||||||| |||||||| |
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| T |
12537971 |
tagaaatctccaccacaactttatctttgcaaa |
12537939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 392
Target Start/End: Complemental strand, 6666784 - 6666722
Alignment:
| Q |
330 |
ttttcctctaatttctatcaatttgttagggtttagaaatctctaccactactttatatttgc |
392 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||| |||||||||| || | ||||| ||||| |
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| T |
6666784 |
ttttcctctcatttctatcaatttattagggtttacaaatctctactaccaatttatctttgc |
6666722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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