View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11420_low_1 (Length: 609)
Name: NF11420_low_1
Description: NF11420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11420_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 9 - 434
Target Start/End: Original strand, 53975854 - 53976270
Alignment:
| Q |
9 |
agcataggatagttaggttcctttttatatgaacatagttaattgagatgaaagaaacttgtttgatggtctttgcatatcaattttgcattagacacca |
108 |
Q |
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| T |
53975854 |
agcataggatagttaggttcctttttgtatgaacatagttaattgagatgaaagaaacttgtttgatgatctttgcatatcaattttgcattagacacca |
53975953 |
T |
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| Q |
109 |
taaactactataacaatagaaaatagaaattaacagatgagtagttttgaaaagtgttactccaatagctagcgagatagggttgaatatatatgaaagt |
208 |
Q |
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| T |
53975954 |
taaactactataacaatagaaaatagaaattaacagatgagtagttttgaaaattgttactccaatagctagcgagctagggttgaatat----gaaagt |
53976049 |
T |
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| Q |
209 |
gaaagataaatgggcacacgtggcgtaggcatagttaggatatgagaaagatagagaaacgaaaaagagaattggcatgatccggaaaacatgcctatat |
308 |
Q |
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| T |
53976050 |
gaaagataaatgggcgcacgtggcgtaggcatagttaggatatgagaaagatagagaaacgaaaaagagaattggcatgatccggaaaacatgcctatat |
53976149 |
T |
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| Q |
309 |
gagtttgtcaggtcctacaaagaattcgaattcccgggcacttggggatttggcatttgccttacatacataaagaccacaatgaaatgaaatccccaca |
408 |
Q |
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| T |
53976150 |
gagtctgtcaggtcctacaaagaattcgaattcccgggcacttggggatttggcatttgccttacatacataaagaccac-----aatgaaatccccaca |
53976244 |
T |
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| Q |
409 |
tgtgcctttcaaaagtgagtttccac |
434 |
Q |
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| T |
53976245 |
tgtgcctttcaaaagtgagtttccac |
53976270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 458 - 589
Target Start/End: Original strand, 53976317 - 53976444
Alignment:
| Q |
458 |
ctttgccttgttatttatctatctatcttttttcccccacttgtttcccacgataatcttcaattaggaacatcataaacaaaattgtgatatattacag |
557 |
Q |
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||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
53976317 |
ctttgccttgttatttatc----tatctttttttccccacttgtttcccacgataatcttcaattaggaacatcataaacaaaattttcatatattacag |
53976412 |
T |
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| Q |
558 |
cttaatttccctttttgtccatctatacccgt |
589 |
Q |
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| T |
53976413 |
cttaatttccctttttgtccatctatacccgt |
53976444 |
T |
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