View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11420_low_11 (Length: 375)
Name: NF11420_low_11
Description: NF11420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11420_low_11 |
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| [»] scaffold0024 (3 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 171; Significance: 9e-92; HSPs: 3)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 2 - 204
Target Start/End: Original strand, 29196 - 29398
Alignment:
| Q |
2 |
gcttgttcaaatttcagtaccctacagtgctatagcgtcgttatagtcgatatttgaaaacatttgtactaagtagtgtatgacagagcaatattgattt |
101 |
Q |
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| T |
29196 |
gcttgttcaaatttcagtatgctacagtgatatagcgtcgttatagttgatatttgagaacatttgtactaagtagtgtatgacagagcaatattgattt |
29295 |
T |
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| Q |
102 |
gttcaatactgtccactacgctatagttccatattagctgctatttgacaatactgagtcgctggatgctgtttgtataataggatgaaactataggatt |
201 |
Q |
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| T |
29296 |
gttcaatactgtccactacgctagagttccacattagctgcaatttgacaatactgagtcgctggatgctgtttgtataataggatgaaactataggatt |
29395 |
T |
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| Q |
202 |
tta |
204 |
Q |
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||| |
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| T |
29396 |
tta |
29398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 199 - 276
Target Start/End: Original strand, 29428 - 29505
Alignment:
| Q |
199 |
attttattaatattggcgtgaaggatgtgttacagaagacacgacactggatgtatgttttttgttgttgttcactca |
276 |
Q |
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| T |
29428 |
attttattaatattggcgtgaaggatgtgttacagaagagacgacactgcatgcatgttttttgttgttgttcactca |
29505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 308 - 359
Target Start/End: Original strand, 29566 - 29617
Alignment:
| Q |
308 |
tattgcagctggtggatggcactctactgcattgaccgatgaaggagaggtg |
359 |
Q |
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| T |
29566 |
tattgcagctggtggatggcactctactgcattgacagatgacggagaggtg |
29617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 2101636 - 2101691
Alignment:
| Q |
28 |
gtgctatagcgtcgttatagtcgatatttgaaaaca-tttgtactaagtagtgtat |
82 |
Q |
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| T |
2101636 |
gtgctatagcgtcgttatagccgttatttgacaacactttgtactaaatagtgtat |
2101691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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