View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11420_low_12 (Length: 357)
Name: NF11420_low_12
Description: NF11420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11420_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 59 - 342
Target Start/End: Complemental strand, 2640038 - 2639750
Alignment:
| Q |
59 |
tcaacatacaagcatatcattgtgatatcagtgtcactcaggtttaacacatacataccatatttaattgtgcatattttgaagccaagatgaatnnnnn |
158 |
Q |
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| T |
2640038 |
tcaacatacaagcatatcattgtgatatcagtgtccctcaggtttaacacatacataccatatttaattgtgcatattttgaagccaagatgaataaaaa |
2639939 |
T |
|
| Q |
159 |
nnnn-ctgatttatcctcttgttccatgctcttgaagcctcctttaaaccatctagtgcctcatgcaaattatacaccatatgtt----cgtttttacct |
253 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
2639938 |
aaaaactgatctatcctcttgttccatgctcttgaagcctcctttaaaccatctagtgcctcatgcaaattatacaccatatgttacttcgcttttacct |
2639839 |
T |
|
| Q |
254 |
caaatcctgaaagttgagtgacaaaaaagagttatctctaatgttccattgaccattttcttctacaagctaatgtaactattagtctg |
342 |
Q |
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||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2639838 |
caaatcctgaaggttgagtgacaaaaaagagttttctctaatggtccattgaccattttcctctacaagctaatgtaactattagtctg |
2639750 |
T |
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