View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11420_low_13 (Length: 329)
Name: NF11420_low_13
Description: NF11420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11420_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 55203167 - 55202839
Alignment:
| Q |
1 |
tcgcagttatgtctgtttacaagcttcctcaaggagaacagttactaataaacgcacctgagatcgttgagaagtttctcgaagctgaacaagatccttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55203167 |
tcgcagttatgtctgtttacaagcttcctcaaggagaacagttactaataaacgcacctgagatcgttgagaagtttctcgaagctgaacaagatccttc |
55203068 |
T |
|
| Q |
101 |
atgcaagcgtagtgcttttcttatgccgttttcttgtgctcaggatcgtgctatcaaatatcttttttctaatatatagataacattattgcttgggatg |
200 |
Q |
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||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55203067 |
atgtaagcgtattgcttttcttatgccgttttcttgtgctcaggatcgtgctatcaaatatcttttttctaatatatagataacattattgcttgggatg |
55202968 |
T |
|
| Q |
201 |
aag--------------atgattgttttggaagtgattaagaaagtttataaatggaatgagaagtgtgaaaataagtggaaatatatgaagattattat |
286 |
Q |
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| T |
55202967 |
aagatgaacaacttcaaatgattgttttggaagtgattaagaaagtttataaatggaatgagaagtgtgaaaataagtggaaatatatgaagattattat |
55202868 |
T |
|
| Q |
287 |
atcgttgttgagtgcaaattctacttctg |
315 |
Q |
| |
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| T |
55202867 |
atcgttgttgagtgcaaattctacttctg |
55202839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 1471556 - 1471601
Alignment:
| Q |
1 |
tcgcagttatgtctgtttacaagcttcctcaaggagaacagttact |
46 |
Q |
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| T |
1471556 |
tcgctgttatgtctgtttataagcttcctcaaggggaacagttact |
1471601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 311
Target Start/End: Original strand, 1471820 - 1471866
Alignment:
| Q |
265 |
ggaaatatatgaagattattatatcgttgttgagtgcaaattctact |
311 |
Q |
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| T |
1471820 |
ggaaatatattaagattattatttctttgttgagtgctaattctact |
1471866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 51 - 167
Target Start/End: Original strand, 46466692 - 46466808
Alignment:
| Q |
51 |
aacgcacctgagatcgttgagaagtttctcgaagctgaacaagatccttcatgcaagcgtagtgcttttcttatgccgttttcttgtgctcaggatcgtg |
150 |
Q |
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||||| || ||||| |||||||||||||| ||| ||||||| ||| | || || ||||||| |||||||||||||| | ||||||||||||||||||||| |
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| T |
46466692 |
aacgcgccggagattgttgagaagtttcttgaatctgaacaggattcgtcgtgtaagcgtaatgcttttcttatgctgatttcttgtgctcaggatcgtg |
46466791 |
T |
|
| Q |
151 |
ctatcaaatatcttttt |
167 |
Q |
| |
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| T |
46466792 |
caatcaaatatcttttt |
46466808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 164
Target Start/End: Original strand, 22853691 - 22853795
Alignment:
| Q |
60 |
gagatcgttgagaagtttctcgaagctgaacaagatccttcatgcaagcgtagtgcttttcttatgccgttttcttgtgctcaggatcgtgctatcaaat |
159 |
Q |
| |
|
|||||| ||||||||||||||||| || |||||||||||||||| ||||| | ||||||| |||||||||||| ||||||| |||||||| | || ||| |
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| T |
22853691 |
gagatcattgagaagtttctcgaatctcaacaagatccttcatgtaagcgcaatgctttttttatgccgtttttgtgtgctcgggatcgtgttgtccaat |
22853790 |
T |
|
| Q |
160 |
atctt |
164 |
Q |
| |
|
||||| |
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|
| T |
22853791 |
atctt |
22853795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 147
Target Start/End: Original strand, 18106670 - 18106757
Alignment:
| Q |
60 |
gagatcgttgagaagtttctcgaagctgaacaagatccttcatgcaagcgtagtgcttttcttatgccgttttcttgtgctcaggatc |
147 |
Q |
| |
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|||||| ||||||||||||||| | || |||||||||||||||| ||||||| ||||||| |||||| |||||| ||||||| ||||| |
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| T |
18106670 |
gagatcattgagaagtttctcgtatctcaacaagatccttcatgtaagcgtaatgctttttttatgctgttttcgtgtgctcgggatc |
18106757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 31937476 - 31937431
Alignment:
| Q |
1 |
tcgcagttatgtctgtttacaagcttcctcaaggagaacagttact |
46 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||| || |||||||| |
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| T |
31937476 |
tcgctgttatgtctgtttataagcttcctcaaggggagcagttact |
31937431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 52522377 - 52522337
Alignment:
| Q |
6 |
gttatgtctgtttacaagcttcctcaaggagaacagttact |
46 |
Q |
| |
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|||||||||||||| |||||||||||||| || |||||||| |
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|
| T |
52522377 |
gttatgtctgtttataagcttcctcaaggggagcagttact |
52522337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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