View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11420_low_15 (Length: 315)
Name: NF11420_low_15
Description: NF11420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11420_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 108 - 296
Target Start/End: Complemental strand, 18679134 - 18678931
Alignment:
| Q |
108 |
tttgtttacttgagggacaagttatgcctcataagcttgtatgattatggattaaagggtgtttattagaatattaatccataatcatatggtagttagt |
207 |
Q |
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| T |
18679134 |
tttgtttacttgagggacaagttaggtcacataagcttgtatgattatggattaaagagggtgtattaaaatattaatccataatcatatggtagttagt |
18679035 |
T |
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| Q |
208 |
tacataatcg-ttttcggactttggtg--------------aacttgcatcacaaatcaagtgtatataactagttgtaatgctctttttcaacaatcaa |
292 |
Q |
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| T |
18679034 |
tacataaccgtttttcggactttgaggagttagttactaataacttacatcacaaatcaagtgtatacagctagttgtgatactctttttcatcaatcaa |
18678935 |
T |
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| Q |
293 |
tgaa |
296 |
Q |
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|||| |
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| T |
18678934 |
tgaa |
18678931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 173 - 296
Target Start/End: Complemental strand, 30808145 - 30808009
Alignment:
| Q |
173 |
ttagaatattaatccataatcatatggtagttagttacataatcgttttcggactttggtga-------------acttgcatcacaaatcaagtgtata |
259 |
Q |
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| T |
30808145 |
ttagaatattaatccataatcatagggtagttagttacataaccatttctggactttgctgagtagttactgataacttgcataacaagtcaagtgtata |
30808046 |
T |
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| Q |
260 |
taactagttgtaatgctctttttcaacaatcaatgaa |
296 |
Q |
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| T |
30808045 |
taactaattgcaatgctctttttcatcaatcaatgaa |
30808009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 234 - 296
Target Start/End: Complemental strand, 8543775 - 8543712
Alignment:
| Q |
234 |
aacttgcatcacaaatcaagtgtatataactagttgtaatgc-tctttttcaacaatcaatgaa |
296 |
Q |
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| T |
8543775 |
aacttgcatcacaagtcaagtgtatataactagttgtaatgcttttttttcatcaatcaatgaa |
8543712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 296
Target Start/End: Complemental strand, 40197536 - 40197475
Alignment:
| Q |
234 |
aacttgcatcacaaatcaagtgtatataactagttgtaatgctctttttcaacaatcaatgaa |
296 |
Q |
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| T |
40197536 |
aacttgcatcacaagtcaagtgtatataactagttgtaatgct-tctttcatcaatcaatgaa |
40197475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 166
Target Start/End: Original strand, 18508541 - 18508600
Alignment:
| Q |
107 |
atttgtttacttgagggacaagttatgcctcataagcttgtatgattatggattaaaggg |
166 |
Q |
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| T |
18508541 |
atttgtttacttgagggacaaattaggtctcataagcttgtaggattatagattaaaggg |
18508600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 33704597 - 33704514
Alignment:
| Q |
114 |
tacttgagggacaagttatgcctcataagcttgtatgattatggattaaagggtgtttattagaatattaatccataatcatat |
197 |
Q |
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| T |
33704597 |
tacttaagggacaagttaggtctcataagcttgtaagattatggattaaaggggttgtattaaatgactaatccataatcatat |
33704514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 33716928 - 33716852
Alignment:
| Q |
120 |
agggacaagttatgcctcataagcttgtatgattatggattaaagggtgtttattagaatattaatccataatcatat |
197 |
Q |
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| T |
33716928 |
agggacaagtta-gtctcataagcttgtaagattgtggattaaaggggttgtattaaatgactaatccataatcatat |
33716852 |
T |
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