View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11420_low_18 (Length: 303)
Name: NF11420_low_18
Description: NF11420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11420_low_18 |
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| [»] scaffold0150 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 62 - 297
Target Start/End: Original strand, 52133555 - 52133790
Alignment:
| Q |
62 |
acaacgagttgaaatatcacatgtgacataagcacattggtttgagcatctatagtacaaagttccttcagctcctacgatgttatttgcatcagcatca |
161 |
Q |
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| T |
52133555 |
acaacgagttgagctatcacatgtgacataagcacacctgtttaagcatctatagtacaaagttacttcatctcctacgatgttattggcatctgcatca |
52133654 |
T |
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| Q |
162 |
tttgtgggaagaaagccagcaattccagcagaagagacaggagctcttgggttcaagagttcgtctttagtttggttttgttccatataattatcagaca |
261 |
Q |
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| T |
52133655 |
tttgcgggaagaaagccagcaattccagcagaagagacaggagctattgggttcaagagttcctccttagtttggttttgttccatataattatcagaca |
52133754 |
T |
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| Q |
262 |
gagtttcaacactatgatagaggttacctatgctac |
297 |
Q |
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| T |
52133755 |
gagtttcaacactatgatagaggttacctatgctac |
52133790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 162 - 297
Target Start/End: Original strand, 8865 - 9000
Alignment:
| Q |
162 |
tttgtgggaagaaagccagcaattccagcagaagagacaggagctcttgggttcaagagttcgtctttagtttggttttgttccatataattatcagaca |
261 |
Q |
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|||| |||||||| ||| |||||| ||| ||| ||| ||||||||| ||||||| | | ||||||||||| | |||||||||||||||||| |||| |
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| T |
8865 |
tttgcgggaagaaggcctgcaatttcagttgaatagataggagctctggggttcagcaaaacctctttagtttgttcttgttccatataattatcggaca |
8964 |
T |
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| Q |
262 |
gagtttcaacactatgatagaggttacctatgctac |
297 |
Q |
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| T |
8965 |
aagtttcaacactgttatagagattaccaatgctac |
9000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 17020342 - 17020270
Alignment:
| Q |
225 |
tctttagtttggttttgttccatataattatcagacagagtttcaacactatgatagaggttacctatgctac |
297 |
Q |
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| T |
17020342 |
tctttagtttggtcttgttccatataatgatcggacaaagtttcaacactgttatagagattaccaatgctac |
17020270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 17550779 - 17550707
Alignment:
| Q |
225 |
tctttagtttggttttgttccatataattatcagacagagtttcaacactatgatagaggttacctatgctac |
297 |
Q |
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| T |
17550779 |
tctttagtttggtcttgttccatataatgatcggacaaagtttcaacactgttatagagattaccaatgctac |
17550707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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