View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11420_low_2 (Length: 606)
Name: NF11420_low_2
Description: NF11420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11420_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 25 - 593
Target Start/End: Complemental strand, 8967531 - 8966964
Alignment:
| Q |
25 |
ggtggctcactctctataaacagaagaggagcacacattccccatatatgtaaaatcctaatagtgacacatgaatatagtatttaagtgtgtgtttaat |
124 |
Q |
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| T |
8967531 |
ggtggctcactctctataaacagaagaggagcacacattccccgtatatgtaaaatcctaatagtgacacatgaatatagtatttaagtgtgtgtttaat |
8967432 |
T |
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| Q |
125 |
ttttaattaatggtttaatcaagatttgtcgttgggattgttccgataagaggtttaaattttcaaatagcccctcttaaattaccagcagattaatcct |
224 |
Q |
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| T |
8967431 |
ttttaattaatggtttaatcaagatttgtcgttgggattgttccgataagaggtttaaattttcaaatagcccctcttaaattaccagcagattaatcct |
8967332 |
T |
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| Q |
225 |
caccctagtttggataaggt-ttttcaatgattcttcagcaagaacgtcaattgcatattggtgttattcgtactcccactgctctctgaatcccattac |
323 |
Q |
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| T |
8967331 |
caccctagtttggataaggttttttcaatgattcttcagcaagaacatcaattgcatgttggtgttattcgtactcccactgctctctgaatcccattac |
8967232 |
T |
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| Q |
324 |
aaggcaatgacgacaaggctcctttcaaattcaactccaccaaacaaacaaggtcatgcttgattatgcactcgtttcaatcgaacaaatcacaccattg |
423 |
Q |
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| T |
8967231 |
aaggcaat---gacaaggctcctttcaaattcaactccaccaaacaaacaaggtcatgcttgattatgcactcgtttcaatcgaacaaatcacactattg |
8967135 |
T |
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| Q |
424 |
aaacatgctttctgaagcatggaa-ccaagaattcggtgcataatgttgcaaactgctgatcctcaacctgagtgtgattccaaggttgcaagcgttctt |
522 |
Q |
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| T |
8967134 |
aaacatgctttctgaagcatggaatccaagaattcggtgcataatgttgcaaactgctgatcctcaacctgagtgtgattccaacgttgcaagcgttctt |
8967035 |
T |
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| Q |
523 |
taatttttagcctaaacaaggatcaaattcaaagtttgtttgccttgttgccatctgctacacctgatgtc |
593 |
Q |
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| T |
8967034 |
taatttttagcctaaacaaggatcaaattcaaagtttgtttgccttgttgccatctgctacacctaatgtc |
8966964 |
T |
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