View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11420_low_20 (Length: 293)
Name: NF11420_low_20
Description: NF11420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11420_low_20 |
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| [»] scaffold0489 (1 HSPs) |
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| [»] scaffold0140 (1 HSPs) |
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Alignment Details
Target: scaffold0489 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0489
Description:
Target: scaffold0489; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 279
Target Start/End: Original strand, 11071 - 11344
Alignment:
| Q |
17 |
agatagaagactccatatatattacatgcctctctcgctcttacttccttctcttaaatgcagagacaactggaatgaattgccatgttatgtacgtaag |
116 |
Q |
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| T |
11071 |
agatagaagactccatatatattacatgcctctctcgctcttacttccttctcttaaatgcagagacaactggaatgaattgccatgttatgtacgtaag |
11170 |
T |
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| Q |
117 |
gttaaatttttaaaacgtggnnnnnnnttcttaaggttaaaaacaaataa-accatgccctaagtggtcatattaatgtttcaagtgtgtaactctagtt |
215 |
Q |
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| T |
11171 |
gttatatttttaaaacgtggaaaaaaattcttaaggtaaaaaacaaaaaagaccatgccctaagtagtcatattaatgtttcaagtgtgtaacgctagtt |
11270 |
T |
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| Q |
216 |
taaaacctcat----------tttctttctttttatcacatcatcaacttagataatctatgatataacttctt |
279 |
Q |
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||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11271 |
taaaacctcattttctttctatttctttcttttaatcacatcatcaacttagataatctatgatataacttctt |
11344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 279
Target Start/End: Complemental strand, 9957 - 9684
Alignment:
| Q |
17 |
agatagaagactccatatatattacatgcctctctcgctcttacttccttctcttaaatgcagagacaactggaatgaattgccatgttatgtacgtaag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9957 |
agatagaagactccatatatattacatgcctctctcgctcttacttccttctcttaaatgcagagacaactggaatgaattgccatgttatgtacgtaag |
9858 |
T |
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| Q |
117 |
gttaaatttttaaaacgtggnnnnnnnttcttaaggttaaaaacaaataa-accatgccctaagtggtcatattaatgtttcaagtgtgtaactctagtt |
215 |
Q |
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|||| ||||||||||||||| |||||||||| ||||||||| || |||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
9857 |
gttatatttttaaaacgtggaaaaaaattcttaaggtaaaaaacaaaaaagaccatgccctaagtagtcatattaatgtttcaagtgtgtaacgctagtt |
9758 |
T |
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| Q |
216 |
taaaacctcat----------tttctttctttttatcacatcatcaacttagataatctatgatataacttctt |
279 |
Q |
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||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
9757 |
taaaacctcattttctttctatttctttcttttaatcacatcatcaacttagataatctatgatataacttctt |
9684 |
T |
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