View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11420_low_21 (Length: 290)

Name: NF11420_low_21
Description: NF11420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11420_low_21
NF11420_low_21
[»] chr1 (13 HSPs)
chr1 (19-275)||(1868437-1868693)
chr1 (19-275)||(1842828-1843084)
chr1 (19-269)||(1856848-1857095)
chr1 (19-272)||(1815949-1816199)
chr1 (26-275)||(9161778-9162027)
chr1 (26-269)||(9155866-9156109)
chr1 (26-275)||(9229572-9229821)
chr1 (26-275)||(9118425-9118674)
chr1 (26-275)||(9170604-9170853)
chr1 (203-275)||(9218864-9218936)
chr1 (26-147)||(9200171-9200292)
chr1 (26-145)||(9218687-9218806)
chr1 (199-275)||(9200344-9200420)
[»] chr7 (1 HSPs)
chr7 (125-251)||(37572123-37572246)
[»] chr3 (4 HSPs)
chr3 (208-275)||(40568396-40568463)
chr3 (196-275)||(40597784-40597863)
chr3 (196-275)||(40572997-40573076)
chr3 (208-275)||(40591302-40591369)
[»] chr2 (1 HSPs)
chr2 (223-275)||(2015288-2015340)


Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 1868693 - 1868437
Alignment:
Q  19 ttggttccatctaagagaatgttatcactcttgacatctctgtggataataggtattgaggcatatgaatgtagatatgacaaagcttcagctacctctg 118  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1868693 ttggttctatctaagagaatgttatcactcttgacatctctatggatgatgggtattgaggcatatgaatgtagatatgacaaagcttcagctacctctg 1868594  T
Q  119 cggctatcttaagacgagttttccatgtttcattattcaccttattaccttgtgtgtgtataaaaccagaaagggtgccattggtaacaaattcataaac 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1868593 cggctatcttaagacgagttttccatgtttcattattcaccttattactttgtgtgtgtataaaaccagaaagggtgccattggtaacaaattcataaac 1868494  T
Q  219 caacaaaggaacttctgtctctaaacaacaccccaagagtttgaccacattcctatg 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1868493 caacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatg 1868437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 1843084 - 1842828
Alignment:
Q  19 ttggttccatctaagagaatgttatcactcttgacatctctgtggataataggtattgaggcatatgaatgtagatatgacaaagcttcagctacctctg 118  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1843084 ttggttctatctaagagaatgttatcactcttgacatctctatggattattggtattgaggcatatgaatgtagatatgacaaagtttcagctacctctg 1842985  T
Q  119 cggctatcttaagacgagttttccatgtttcattattcaccttattaccttgtgtgtgtataaaaccagaaagggtgccattggtaacaaattcataaac 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1842984 cggctatcttaagacgagttttccatgtttcattattcaccttattactttgtgtgtgtataaaaccagaaagggtgccattggtaacaaattcataaac 1842885  T
Q  219 caacaaaggaacttctgtctctaaacaacaccccaagagtttgaccacattcctatg 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1842884 caacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatg 1842828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 19 - 269
Target Start/End: Complemental strand, 1857095 - 1856848
Alignment:
Q  19 ttggttccatctaagagaatgttatcactcttgacatctctgtggataataggtattgaggcatatgaatgtagatatgacaaagcttcagctacctctg 118  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| || ||| ||||||||||||||||||||||||||| ||| |||||||||||||    
T  1857095 ttggttccatctaagagaatgttatcactcttgacatctctatggatgatgggtgttgaggcatatgaatgtagatatgacagagcctcagctacctctg 1856996  T
Q  119 cggctatcttaagacgagttttccatgtttcattattcaccttattaccttgtgtgtgtataaaaccagaaagggtgccattggtaacaaattcataaac 218  Q
    ||||||||||||||||||| ||||| |||  || |||   | | ||||||| |||||| |||||  ||||||| || |||||| ||||||| ||||||||    
T  1856995 cggctatcttaagacgagtcttccaagttggatcatt---cgtcttaccttttgtgtgaataaattcagaaagagtaccattgctaacaaactcataaac 1856899  T
Q  219 caacaaaggaacttctgtctctaaacaacaccccaagagtttgaccacatt 269  Q
    |||||||||||||||||| |||| ||||||||| |||||||||||||||||    
T  1856898 caacaaaggaacttctgtttctagacaacaccctaagagtttgaccacatt 1856848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 19 - 272
Target Start/End: Original strand, 1815949 - 1816199
Alignment:
Q  19 ttggttccatctaagagaatgttatcactcttgacatctctgtggataataggtattgaggcatatgaatgtagatatgacaaagcttcagctacctctg 118  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||  |||||| |||||||||| |||| ||||||||||      
T  1815949 ttggttccatctaagagaatgttagcactcttgacatctctatggataatgggtattgaggcagctgaatgcagatatgacagagctccagctacctcaa 1816048  T
Q  119 cggctatcttaagacgagttttccatgtttcattattcaccttattaccttgtgtgtgtataaaaccagaaagggtgccattggtaacaaattcataaac 218  Q
    | |||||| |||||||||||||||| ||   ||  ||   | | |||||||||||| | | |||  ||||||| || |||||| ||||||| ||||||||    
T  1816049 cagctatcctaagacgagttttccaagtaagatcgtt---cgtcttaccttgtgtgcgaagaaattcagaaagagtaccattgctaacaaactcataaac 1816145  T
Q  219 caacaaaggaacttctgtctctaaacaacaccccaagagtttgaccacattcct 272  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  1816146 caacaaaggaacttctgtttctagacaacaccccaagagtttgaccacattcct 1816199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 275
Target Start/End: Original strand, 9161778 - 9162027
Alignment:
Q  26 catctaagagaatgttatcactcttgacatctctgtggataataggtattgaggcatatgaatgtagatatgacaaagcttcagctacctctgcggctat 125  Q
    ||||||||||||||||   |||||| |||||||| ||||||||||||||||| ||| ||||||||| ||| || |||||| | |||  |||||| |||||    
T  9161778 catctaagagaatgttggtactcttaacatctctatggataataggtattgatgcagatgaatgtaaatacgataaagctccggctgtctctgctgctat 9161877  T
Q  126 cttaagacgagttttccatgtttcattattcaccttattaccttgtgtgt---gtataaaaccagaaagggtgccattggtaacaaattcataaaccaac 222  Q
    ||| | ||| ||||||||||||  ||| ||  | ||||   |||  || |   |||| ||| |  |||| || |||||| |||| |||||||| ||||||    
T  9161878 ctttaaacgtgttttccatgttggattgtttgctttat---ctttagtattatgtatgaaatcgaaaagtgtaccattgctaacgaattcatacaccaac 9161974  T
Q  223 aaaggaacttctgtctctaaacaacaccccaagagtttgaccacattcctatg 275  Q
     ||||||||||||||||||||||||| |||||||||||||| ||||| |||||    
T  9161975 gaaggaacttctgtctctaaacaacatcccaagagtttgacaacatttctatg 9162027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 26 - 269
Target Start/End: Original strand, 9155866 - 9156109
Alignment:
Q  26 catctaagagaatgttatcactcttgacatctctgtggataataggtattgaggcatatgaatgtagatatgacaaagcttcagctacctctgcggctat 125  Q
    |||| |||||||||||   ||| ||||||||||| |||||||| |||||||| ||| ||||||||||||| || |||||| | |||  |||||| |||||    
T  9155866 catccaagagaatgttggtacttttgacatctctatggataatcggtattgatgcagatgaatgtagatacgataaagctccggctgtctctgctgctat 9155965  T
Q  126 cttaagacgagttttccatgtttcattattcaccttattaccttgtgtg---tgtataaaaccagaaagggtgccattggtaacaaattcataaaccaac 222  Q
    ||| | ||| ||||||||||||  ||| ||    ||||   |||  ||    ||||| ||| || |||| || |||||| |||| ||||||||||||||     
T  9155966 ctttaaacgggttttccatgttggattgtttgttttat---ctttagtactatgtatgaaatcaaaaagtgtaccattgctaacgaattcataaaccaag 9156062  T
Q  223 aaaggaacttctgtctctaaacaacaccccaagagtttgaccacatt 269  Q
     ||||||||||||||||||||||||| |||||||||||||| |||||    
T  9156063 gaaggaacttctgtctctaaacaacatcccaagagtttgacaacatt 9156109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 26 - 275
Target Start/End: Original strand, 9229572 - 9229821
Alignment:
Q  26 catctaagagaatgttatcactcttgacatctctgtggataataggtattgaggcatatgaatgtagatatgacaaagcttcagctacctctgcggctat 125  Q
    |||| |||||||||||  |||| ||||||||||| |||||||| ||||  || ||| |||||||||||||||| |||||| | ||||  || || |||||    
T  9229572 catccaagagaatgttggcacttttgacatctctatggataattggtaaggatgcagatgaatgtagatatgataaagctcctgctatttccgctgctat 9229671  T
Q  126 cttaagacgagttttccatgtttcattattcaccttattaccttgtgtgtgtataaaaccagaaagggtgccattggtaacaaattcataaaccaacaaa 225  Q
    | | | ||| ||||||||| || |||||||  |||| | |      ||||| || ||| |  ||||||| |||||| ||| |||||||||||| |  |||    
T  9229672 ccttaaacgcgttttccatattgcattattttccttttcaatactagtgtgcatcaaatcgaaaagggtaccattgctaataaattcataaactagtaaa 9229771  T
Q  226 ggaacttctgtctctaaacaacaccccaagagtttgaccacattcctatg 275  Q
    ||||||| |||||| |||||||| |||||||||||||| ||||| |||||    
T  9229772 ggaacttgtgtctccaaacaacatcccaagagtttgacaacatttctatg 9229821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 26 - 275
Target Start/End: Complemental strand, 9118674 - 9118425
Alignment:
Q  26 catctaagagaatgttatcactcttgacatctctgtggataataggtattgaggcatatgaatgtagatatgacaaagcttcagctacctctgcggctat 125  Q
    |||| |||||||||||   |||||| |||||||| |||||||| || | ||| ||| ||||||||||||| || |||||| |||||  |||||| |||||    
T  9118674 catccaagagaatgttggtactcttaacatctctatggataattggaaatgatgcagatgaatgtagatacgataaagctccagctgtctctgctgctat 9118575  T
Q  126 cttaagacgagttttccatgtttcattattcaccttattaccttgtgtgt-gtataaaaccagaaagggtgccattggtaacaaattcataaaccaacaa 224  Q
    | | ||||| |||| |||| ||  |||||| |  ||||| | | || | | |||| ||| |  |||| || || | | |||| |||||||| |||||  |    
T  9118574 ccttagacgtgtttcccatcttggattatttattttatt-cttagtattttgtatgaaatcgaaaagtgtaccgtggctaacgaattcatagaccaagga 9118476  T
Q  225 aggaacttctgtctctaaacaacaccccaagagtttgaccacattcctatg 275  Q
    ||||||||||||||||||||||||||| || |||||||| |||||||||||    
T  9118475 aggaacttctgtctctaaacaacaccctaaaagtttgacaacattcctatg 9118425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 275
Target Start/End: Original strand, 9170604 - 9170853
Alignment:
Q  26 catctaagagaatgttatcactcttgacatctctgtggataataggtattgaggcatatgaatgtagatatgacaaagcttcagctacctctgcggctat 125  Q
    |||| |||||||||||   |||||| |||||||| |||||||| || ||||| ||| ||||||||||||| || |||||| |||||  |||||| |||||    
T  9170604 catccaagagaatgttggtactcttaacatctctatggataattggaattgatgcagatgaatgtagatacgataaagctccagctgtctctgctgctat 9170703  T
Q  126 c-ttaagacgagttttccatgtttcattattcaccttattaccttgtgtg---tgtataaaaccagaaagggtgccattggtaacaaattcataaaccaa 221  Q
    | ||||| || ||||||||||||  ||||||    ||||   |||  |||   ||||| ||| |  |||| || || ||| |||||||||| || |||||    
T  9170704 ccttaag-cgggttttccatgttggattatttgttttat---ctttagtgctttgtatgaaatcgaaaagtgtaccgttgctaacaaattcgtacaccaa 9170799  T
Q  222 caaaggaacttctgtctctaaacaacaccccaagagtttgaccacattcctatg 275  Q
      |||||||||||||||||| ||||||||| | ||||||||| |||||||||||    
T  9170800 tgaaggaacttctgtctctagacaacaccctaggagtttgacaacattcctatg 9170853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 9218864 - 9218936
Alignment:
Q  203 taacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgaccacattcctatg 275  Q
    ||||||||||||| |||||| |||||||||||||||| ||||||||||| || |||||||| || ||||||||    
T  9218864 taacaaattcatacaccaacgaaggaacttctgtctccaaacaacaccctaaaagtttgacaacgttcctatg 9218936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 26 - 147
Target Start/End: Original strand, 9200171 - 9200292
Alignment:
Q  26 catctaagagaatgttatcactcttgacatctctgtggataataggtattgaggcatatgaatgtagatatgacaaagcttcagctacctctgcggctat 125  Q
    |||| |||||||||||   |||||| ||||||||||||||||| || ||||| |||  ||||||||||||||| |||||| |||||  ||| || |||||    
T  9200171 catccaagagaatgttggtactcttaacatctctgtggataattggaattgatgcagctgaatgtagatatgataaagctccagctgtctccgctgctat 9200270  T
Q  126 cttaagacgagttttccatgtt 147  Q
    | | | ||| ||||||||||||    
T  9200271 ccttaaacgtgttttccatgtt 9200292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 9218687 - 9218806
Alignment:
Q  26 catctaagagaatgttatcactcttgacatctctgtggataataggtattgaggcatatgaatgtagatatgacaaagcttcagctacctctgcggctat 125  Q
    |||| |||||||||||   |||||| |||||||| |||||||| || ||||| |||  ||||||||||||||| |||||  |||||  |||||| |||||    
T  9218687 catccaagagaatgttggtactcttaacatctctatggataattggaattgatgcagctgaatgtagatatgataaagcaccagctgtctctgctgctat 9218786  T
Q  126 cttaagacgagttttccatg 145  Q
    | | | ||| ||||||||||    
T  9218787 ccttaaacgtgttttccatg 9218806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 275
Target Start/End: Original strand, 9200344 - 9200420
Alignment:
Q  199 ttggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgaccacattcctatg 275  Q
    ||| |||||||||| || || ||  |||||||||||||||||| |||||| || | ||||||||| |||||||||||    
T  9200344 ttgctaacaaattcgtacactaatgaaggaacttctgtctctagacaacagcctaggagtttgacaacattcctatg 9200420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 125 - 251
Target Start/End: Complemental strand, 37572246 - 37572123
Alignment:
Q  125 tcttaagacgagttttccatgtttcattattcaccttattaccttgtgtgtgtataaaaccagaaagggtgccattggtaacaaattcataaaccaacaa 224  Q
    ||||||||||||||||| | |||  || |||||   | ||||||||||||||||||||  ||||||| || |||||| ||||||| ||||||||||||      
T  37572246 tcttaagacgagttttctaagttggatcattca---tcttaccttgtgtgtgtataaattcagaaagagtaccattgctaacaaactcataaaccaaccg 37572150  T
Q  225 aggaacttctgtctctaaacaacaccc 251  Q
    |||||||||||| |||| |||||||||    
T  37572149 aggaacttctgtttctagacaacaccc 37572123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 275
Target Start/End: Complemental strand, 40568463 - 40568396
Alignment:
Q  208 aattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgaccacattcctatg 275  Q
    ||||||||||| | ||| ||||||||||||||||||||||| |||||||| || |||||||| |||||    
T  40568463 aattcataaacaagcaagggaacttctgtctctaaacaacaacccaagagctttaccacatttctatg 40568396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 275
Target Start/End: Complemental strand, 40597863 - 40597784
Alignment:
Q  196 ccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgaccacattcctatg 275  Q
    ||||||| || |||||||||||| | ||| ||||||||||| ||||||||||| || |  ||||| ||||||||||||||    
T  40597863 ccattgggaataaattcataaacaagcaatggaacttctgtttctaaacaacaacctacaagttttaccacattcctatg 40597784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 275
Target Start/End: Complemental strand, 40573076 - 40572997
Alignment:
Q  196 ccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgaccacattcctatg 275  Q
    ||||||| || ||||||||| || |  || ||||||||||||||||||||||| |||||||  || |||||||| |||||    
T  40573076 ccattgggaataaattcatacacaactaagggaacttctgtctctaaacaacagcccaagatctttaccacatttctatg 40572997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 275
Target Start/End: Complemental strand, 40591369 - 40591302
Alignment:
Q  208 aattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgaccacattcctatg 275  Q
    ||||||||||| | ||| ||||||||||||||||||||||| ||||| | | | |||||||| |||||    
T  40591369 aattcataaacaagcaatggaacttctgtctctaaacaacaacccaaaattcttaccacatttctatg 40591302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 2015288 - 2015340
Alignment:
Q  223 aaaggaacttctgtctctaaacaacaccccaagagtttgaccacattcctatg 275  Q
    |||||||||||||||||||||||||| |||||||| || |||||||| |||||    
T  2015288 aaaggaacttctgtctctaaacaacaacccaagagctttaccacatttctatg 2015340  T

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