View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11420_low_30 (Length: 241)

Name: NF11420_low_30
Description: NF11420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11420_low_30
NF11420_low_30
[»] chr3 (5 HSPs)
chr3 (11-223)||(50806507-50806719)
chr3 (11-223)||(50869158-50869370)
chr3 (11-205)||(48553832-48554026)
chr3 (11-223)||(44196158-44196354)
chr3 (172-202)||(26599146-26599176)
[»] chr7 (4 HSPs)
chr7 (128-204)||(39362045-39362118)
chr7 (172-211)||(39591530-39591569)
chr7 (172-204)||(30456520-30456552)
chr7 (172-204)||(35536075-35536107)
[»] chr6 (1 HSPs)
chr6 (151-202)||(2732311-2732360)
[»] chr4 (1 HSPs)
chr4 (172-204)||(31038937-31038969)
[»] chr2 (1 HSPs)
chr2 (170-202)||(33944571-33944603)


Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 50806507 - 50806719
Alignment:
Q  11 gagatgaaacacatgtgacaacaacatgcatgatgggaacaaatggctatgctgctcctgagtatatcatggcaggtattggcattttaccataaaggtt 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50806507 gagaagaaacacatgtgacaacaacatgcatgatgggaacaaatggctatgctgctcctgagtatatcatggcaggtattggcattttaccataaaggtt 50806606  T
Q  111 ccatttggataaacaacttaagcacttatagcataagcacttatgtataagctgtttttatataaaataaagtcaaatagttttcatataagttgctttg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50806607 ccatttggataaacaacttaagcacttatagcataagcacttatgtataagctgtttttatataaaataaagtcaaatagttttcatataagttgctttg 50806706  T
Q  211 aaattgggtttgg 223  Q
    |||||||||||||    
T  50806707 aaattgggtttgg 50806719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 50869370 - 50869158
Alignment:
Q  11 gagatgaaacacatgtgacaacaacatgcatgatgggaacaaatggctatgctgctcctgagtatatcatggcaggtattggcattttaccataaaggtt 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50869370 gagaagaaacacatgtgacaacaacatgcatgatgggaacaaatggctatgctgctcctgagtatatcatggcaggtattggcattttaccataaaggtt 50869271  T
Q  111 ccatttggataaacaacttaagcacttatagcataagcacttatgtataagctgtttttatataaaataaagtcaaatagttttcatataagttgctttg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50869270 ccatttggataaacaacttaagcacttatagcataagcacttatgtataagctgtttttatataaaataaagtcaaatagttttcatataagttgctttg 50869171  T
Q  211 aaattgggtttgg 223  Q
    |||||||||||||    
T  50869170 aaattgggtttgg 50869158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 11 - 205
Target Start/End: Original strand, 48553832 - 48554026
Alignment:
Q  11 gagatgaaacacatgtgacaacaacatgcatgatgggaacaaatggctatgctgctcctgagtatatcatggcaggtattggcattttaccataaaggtt 110  Q
    |||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  48553832 gagaagaaacacatgtgacaacaacatgcataatgggaacaaaaggctatgctgctcctgagtatatcatgtcaggtattggcattttaccatataggtt 48553931  T
Q  111 ccatttggataaacaacttaagcacttatagcataagcacttatgtataagctgtttttatataaaataaagtcaaatagttttcatataagttg 205  Q
    |||||||||| |||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||| || ||||||||| ||||||    
T  48553932 ccatttggattaacaacttaagcacttatagcataagcgtttatgtataagctatttttatataaaataaagtcagattgttttcataaaagttg 48554026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 44196354 - 44196158
Alignment:
Q  11 gagatgaaacacatgtgacaacaacatgcatgatgggaacaaatggctatgctgctcctgagtatatcatggcaggtattggcattttaccataaaggtt 110  Q
    |||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44196354 gagaagaaacacatgtgacaacaacatgcataatgggaacaaaaggctatgctgctcctgagtatatcatggcaggtattggcattttaccataaaggtt 44196255  T
Q  111 ccatttggataaacaacttaagcacttatagcataagcacttatgtataagctgtttttatataaaataaagtcaaatagttttcatataagttgctttg 210  Q
    |||||||||||||||||||                ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  44196254 ccatttggataaacaactt----------------agcgcttatgtataagctgtttttatttaaaataaagtcaaatagttttcatataagttgctttg 44196171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 202
Target Start/End: Original strand, 26599146 - 26599176
Alignment:
Q  172 ataaaataaagtcaaatagttttcatataag 202  Q
    |||||||||||||||||||||||||||||||    
T  26599146 ataaaataaagtcaaatagttttcatataag 26599176  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 204
Target Start/End: Original strand, 39362045 - 39362118
Alignment:
Q  128 ttaagcacttatagcataagcacttatgtataagctgtttttatataaaataaagtcaaatagttttcatataagtt 204  Q
    |||||||||||||||||||||||||||||||||||| |||| ||   ||  |||||||||| |||||||| ||||||    
T  39362045 ttaagcacttatagcataagcacttatgtataagctattttcat---aataaaagtcaaattgttttcatgtaagtt 39362118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 39591569 - 39591530
Alignment:
Q  172 ataaaataaagtcaaatagttttcatataagttgctttga 211  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  39591569 ataaaataaagtcaaattgttttcatataagttgttttga 39591530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 204
Target Start/End: Complemental strand, 30456552 - 30456520
Alignment:
Q  172 ataaaataaagtcaaatagttttcatataagtt 204  Q
    ||||||||||||||||| |||||||||||||||    
T  30456552 ataaaataaagtcaaattgttttcatataagtt 30456520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 35536075 - 35536107
Alignment:
Q  172 ataaaataaagtcaaatagttttcatataagtt 204  Q
    ||||||||||||||||| |||||||||||||||    
T  35536075 ataaaataaagtcaaattgttttcatataagtt 35536107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 202
Target Start/End: Complemental strand, 2732360 - 2732311
Alignment:
Q  151 ttatgtataagctgtttttatataaaataaagtcaaatagttttcatataag 202  Q
    ||||||||||||| ||||||||  ||||||||||||||  ||||||||||||    
T  2732360 ttatgtataagctatttttata--aaataaagtcaaattattttcatataag 2732311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 204
Target Start/End: Complemental strand, 31038969 - 31038937
Alignment:
Q  172 ataaaataaagtcaaatagttttcatataagtt 204  Q
    ||||||||||||||||| |||||||||||||||    
T  31038969 ataaaataaagtcaaattgttttcatataagtt 31038937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 33944571 - 33944603
Alignment:
Q  170 atataaaataaagtcaaatagttttcatataag 202  Q
    ||||||||||||||||||| |||||||||||||    
T  33944571 atataaaataaagtcaaattgttttcatataag 33944603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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