View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11420_low_31 (Length: 240)
Name: NF11420_low_31
Description: NF11420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11420_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 40727340 - 40727117
Alignment:
| Q |
1 |
tagcgacacataatgattttcgtatttcctgtattgaatttttcagatgcttgttgctacacctggtaggttactggatcatattgagaataagaccgga |
100 |
Q |
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| T |
40727340 |
tagcgacacataatgattttcgtatttcctgtattgaatttttcagatgcttgttgctacacctggtaggttactggatcatattgagaataagaccgga |
40727241 |
T |
|
| Q |
101 |
atatctgtacgactgatgggcttgcagatgcttatacttgacgaagctgatcatttgctggaccttgggtttcgaaaggatatagaaaaaattgttgact |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40727240 |
atatctgtacgagtgatgggcttgcagatgcttatacttgacgaagctgatcatttgctggaccttgggtttcgaaaggatatagaaaaaattgttgact |
40727141 |
T |
|
| Q |
201 |
gtttaccccgtcaaagacaatcct |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
40727140 |
gtttaccccgtcaaagacaatcct |
40727117 |
T |
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