View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11420_low_4 (Length: 508)
Name: NF11420_low_4
Description: NF11420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11420_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 270 - 470
Target Start/End: Complemental strand, 28306297 - 28306097
Alignment:
| Q |
270 |
acctttaaaactgtattgttgttgtatactgcaatttaaacatgtggtccctgtaatttcttaataagtgatggtgtgatagccatctactgatttgggt |
369 |
Q |
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| T |
28306297 |
acctttaaaactgtattgttgttgtatactgcaatttaaacatgtggtccctgtaatttcttaataagtgatggtgtaatagccatctaatgatttgggt |
28306198 |
T |
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| Q |
370 |
aataaatatctttctatgacaaataattgaatataacgaagagctagaatccatataattgcaacatttgcaaatttagatctctcctttccctcattct |
469 |
Q |
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| T |
28306197 |
aataaacatctttctatgataaataattgaatataacgaagagctagaatccatataattgcaagatttgcaaatttagatctctcctttccctcattct |
28306098 |
T |
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| Q |
470 |
c |
470 |
Q |
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| T |
28306097 |
c |
28306097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 9 - 264
Target Start/End: Complemental strand, 28306719 - 28306461
Alignment:
| Q |
9 |
agcataggtagatatatttgaaggataaatgtgaacgttttgtatcatggttagtaagtcagaatcacggcgatccatcgtgattttattgacgttacaa |
108 |
Q |
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| T |
28306719 |
agcataggtagatatgtttgaaggataaatgtgaacgttttgtatcatggtggataagttagaatcacggcgacccatcgtgattttattgaagttacaa |
28306620 |
T |
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| Q |
109 |
agtatagcttttagaaaataacgatgtgtctttgtgatcctgacatacctgccaattgccatgaagttgcggacggtttcaattacatttcaatcctttt |
208 |
Q |
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| T |
28306619 |
attatagcttttggaaaataacaatgcgtctttgtgatcctgacatatc-------tgccatgaagttgcggacggtttcaattacatttcaaacctttt |
28306527 |
T |
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| Q |
209 |
atgtc----------gcaaacatatgcattcgatatattgcatatattgttgtggtggttgcaatg |
264 |
Q |
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| T |
28306526 |
atgtcgtgctaaaatgcaaacatatgcattcgatatattgcatatattgttgtggtggttgcaatg |
28306461 |
T |
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