View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11420_low_5 (Length: 465)
Name: NF11420_low_5
Description: NF11420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11420_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 68 - 455
Target Start/End: Complemental strand, 28192222 - 28191835
Alignment:
| Q |
68 |
attaccctacccccaaatgtaaagttccttggtaagctcatatcatttgagcactatagtgagtagtgattcaaacatgtttgaattaatataggaagac |
167 |
Q |
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| T |
28192222 |
attaccctacccccaaatgtaaagttccttggtaagctcatatcatttgagcactatagtgagtagtgattcaaacatgtttgaattaatataggaagac |
28192123 |
T |
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| Q |
168 |
atttcggggtcaataataagatacacaactaaattaaaaaatgatatttgcttcgattacaaacacctaaattgagtacaataaaaatcacaactaaaat |
267 |
Q |
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| T |
28192122 |
atttcggggtcaataataagatacacaactaaattaaaaaatgatatttgcttcgattacaaacacctaaattgagtacaataaaaatcacaactaaaat |
28192023 |
T |
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| Q |
268 |
ttctaccgtatgtactttgtactcaaaacacattaaggttnnnnnnnccacgtgacgtgtagtctcaaatttcgtctctataattaatgtttgcaatttt |
367 |
Q |
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| T |
28192022 |
ttctaccgtatgtactttgtacccaaaacacattaaggttaaaaaaaccacgtgacgtgtagtctcaaatttcgtctctataattaatgtttgcaatttc |
28191923 |
T |
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| Q |
368 |
tgtgtcacacagaaagaacattatagtaccccttattaatttgatacaaaatagtgaaattaaaaacttcaccctcttctgtcctttg |
455 |
Q |
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| T |
28191922 |
tgtgtcacacagaaagaacattatagtactccttattaatttgatacaaaatagtgaaattaaaaacttcaccctcttctgtcctttg |
28191835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 28192329 - 28192285
Alignment:
| Q |
27 |
tactttaccattgagtcaatcctctccacatttaatatatgatta |
71 |
Q |
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| T |
28192329 |
tactttaccattgagtcaatcctctccacatttaatatatgatta |
28192285 |
T |
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