View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11420_low_6 (Length: 434)
Name: NF11420_low_6
Description: NF11420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11420_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 11 - 418
Target Start/End: Complemental strand, 8459324 - 8458917
Alignment:
| Q |
11 |
caaaggaagagggtaagctttatccaatgccaaaactttcttcattgcttcattgacatcagcttcactaaaattcccaagagcaagctttgttcttacc |
110 |
Q |
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| T |
8459324 |
caaaggaagagggtaagctttatccaatgccaaaactttcttcattgcttcattgacatcagcttcactaaaattcccaagagcaagctttgttcttacc |
8459225 |
T |
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| Q |
111 |
tctccttgaagctgcttaaaaaatctagtagcatttctttgttcttctgcaagctgcgacggctgaactttgttcatgaacagaagtaaaccagttgcag |
210 |
Q |
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| T |
8459224 |
tctccttgaagctgcttaaaaaatctagtagcatttctttgttcttctgcaagctgcgatggctgaactttgttcatgaacagaagtaaaccagttgcag |
8459125 |
T |
|
| Q |
211 |
ccatgtaaagaattgtggaagaaactttcaatgctacaagtgatgcttcacctccggtcgaagcaacggctgcaagaccaaccattgatgaagcggaaag |
310 |
Q |
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| T |
8459124 |
ccatgtaaagaattgtggaagaaactttcaatgctacaagtgatgcttcacctccggtcgaagcaaccgctgcaagaccaaccattgatgaagcagaaag |
8459025 |
T |
|
| Q |
311 |
tgtcatcatgttaattgatgacagtaacagattattccaattgtcgcgctggattccgataatcttgtgcatctctaacctatctgatatgacttccata |
410 |
Q |
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| T |
8459024 |
tgtcatcatgttaattgatgacagtaaaagattattccaattgtcgcgctggattccgataatcttgtgcatctctaacctatctgatatgacttccata |
8458925 |
T |
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| Q |
411 |
atcaaatg |
418 |
Q |
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| T |
8458924 |
atcaaatg |
8458917 |
T |
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Back To:
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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 140 - 238
Target Start/End: Original strand, 1617810 - 1617908
Alignment:
| Q |
140 |
agcatttctttgttcttctgcaagctgcgacggctgaactttgttcatgaacagaagtaaaccagttgcagccatgtaaagaattgtggaagaaacttt |
238 |
Q |
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| T |
1617810 |
agcatttccctgttcctctacaagctgggatggctggattttgttcatgaacagaagtaaagcagttgcagacatataaagaattgtggaagaaacttt |
1617908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 18790820 - 18790886
Alignment:
| Q |
140 |
agcatttctttgttcttctgcaagctgcgacggctgaactttgttcatgaacagaagtaaaccagtt |
206 |
Q |
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| T |
18790820 |
agcatttccctgttcctctacaagctgtgatggctggattttgtttatgaacagaagtaaaccagtt |
18790886 |
T |
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