View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11420_low_9 (Length: 394)
Name: NF11420_low_9
Description: NF11420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11420_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 330
Target Start/End: Complemental strand, 43224784 - 43224465
Alignment:
| Q |
12 |
aagaacagcggagaacaacatgaaatcatgattgcaagaactagccgagacaaaaacagcctgtacagaaattatccagctgccccctccccatagccnn |
111 |
Q |
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| T |
43224784 |
aagaacagcggagaacaacatgaaatcatgactgcaagaactagccgaaacaaaaacagcctgtacagaaattatccagctgccccctccccatagccaa |
43224685 |
T |
|
| Q |
112 |
nnnnnn-caagctattacaatcgccaggatcccaacatcactcgtaaaagagacaaggtgaccatttcaatctacacaaactctacttccatgacataac |
210 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43224684 |
aaaaaaacaagctattacaatcgccgggatcccaacatcactcataaaagagacaaggtgaccatttcaatctacacaaactctacttccatgacataac |
43224585 |
T |
|
| Q |
211 |
cttgatatccccaaaattctcattgatggtcacaattctactgttgaaaatcctatcatttctcacattccaaaacacccaaatcattgtgtaccaaata |
310 |
Q |
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|||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43224584 |
cttgatatccccaaaaatttcattgatggtcacaattctacagttgaaaatcctatcatttctcacattccaaaacacccaaatcattgtgtgccaaata |
43224485 |
T |
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| Q |
311 |
aaaagaaacccctttcgata |
330 |
Q |
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|||||||||||||||||||| |
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| T |
43224484 |
aaaagaaacccctttcgata |
43224465 |
T |
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