View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11421_high_11 (Length: 351)
Name: NF11421_high_11
Description: NF11421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11421_high_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 17 - 351
Target Start/End: Complemental strand, 43690321 - 43689987
Alignment:
| Q |
17 |
accaagtaaacacatccattaccctaaataactaacaaaaaagtgattaaccatatttatacaaaaaagtagttaggaaaaggagagaatattgtctata |
116 |
Q |
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| T |
43690321 |
accaagtaaacacatccattaccctaaataactaacaaaaaagtgattaaccatatttaaacaaaaaagtagttaggaaaaagagagaatattgtctata |
43690222 |
T |
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| Q |
117 |
acctggaagaagtgaagaaggtgaacaatattaggatgattaacagaagacaaaaagttgatctcacagtccaaggaagctctgaggtgagagttgagtt |
216 |
Q |
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| T |
43690221 |
acctggaagaagtgaagaaggtgaacaatattaggatgattaacagaagacaaaaagttgatctcacagtccaaggaagctctgaggtgagagttgagtt |
43690122 |
T |
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| Q |
217 |
tggagagaaagacttgcttcaccgctacatcttcaccacttggtctttgttcagctttccacactgtggaaaaagaaccttctccgattttggactttaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43690121 |
tggagagaaagacttgcttcaccgctacatcttcaccacttggtctttgttcagctttccacactgtggaaaaagaaccttctccgattttggactttaa |
43690022 |
T |
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| Q |
317 |
aacataatagtagtttttgttgtttccttcttctc |
351 |
Q |
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| T |
43690021 |
aacataatagtagtttttgttgtttccttcttctc |
43689987 |
T |
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