View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11421_high_3 (Length: 595)
Name: NF11421_high_3
Description: NF11421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11421_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 1 - 577
Target Start/End: Complemental strand, 47625274 - 47624698
Alignment:
| Q |
1 |
gagaaagattcttcagagaggtgcctgttgaagatcagctctatagttattcctccttcactggagctctccaaggtaccaattaccttcaatattaaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
47625274 |
gagaaagattcttcagagaggtgcctgttgaagatcagctctatagttattcctccttcactggagctctccaaggtaacaattaccttcaatattaaga |
47625175 |
T |
|
| Q |
101 |
gatgactctgtactctcagtggcatgacatgattttactatagctgtttaagctgctagattattgttgtttagtgtttatatgtctgtgcaaattattc |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47625174 |
gatgactctgtactgtcagtggcatgacatgattttactatagctgtttaagctgctagattattgttgtttagtgtttatatgtctgtgcaaattattc |
47625075 |
T |
|
| Q |
201 |
aagttaactctgctgcctgcaagttttgctgtggtagacaatgatctaaatatcgttttttggggtattgcaatgtggaaaacaaaacaaactatgtcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47625074 |
aagttaactctgctgcctgcaagttttgctgtggtagacaatgatctaaatatcgttttttggggtattgcaatgtggaaaacaaaacaaactatgtcat |
47624975 |
T |
|
| Q |
301 |
gaccatgacatttcataactgtactataaagtttcatgcaatggtttatacatgtgctctctggtctcctttttcaacaggttcttgtcaaagatatgaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47624974 |
gaccatgacatttcataactgtactataaagtttcatgcaatggtttatacatgtgctctctggtctcctttttcaacaggttcttgtcaaagatatgaa |
47624875 |
T |
|
| Q |
401 |
gataaaattactcaatgggatgaaggatttgctagatagtggtacgaagattcaggctgttcaagcatggggatggtttattcgaatgctcgggtcccat |
500 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47624874 |
gataaaattgctcaatgggatgaaggatttgctagatagtggtacgaagattcaggctgttcaagcatggggatggtttattcgaatgctcgggtcccat |
47624775 |
T |
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| Q |
501 |
gctttgaaaaacaagcatttagttaatgatatgttgaaaatacctgagcgtacatttacagatcctgaccctcaagt |
577 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47624774 |
gctttgaaaaacaagcatttagttaatgatatgttgaaaatacctgagcgtacatttacagatcctgaccctcaagt |
47624698 |
T |
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